| Hi, my workflow was working fine on Monday/Tuesday. Then I had to stop it to move the output directory as the disk space was getting low. After restarting the workflow, I noticed that output files were for mysterious reasons no longer written by OpenMOLE to the destination even though the processes finished successfully. But that’s another topic… I was going to investigate this further with the latest OpenMOLE master branch. Unfortunately my workflow didn’t run anymore with this new built. Going back to a previous commit didn’t help me either. To help debug the issue, I put all my workflow in a single OpenMOLE batch script and replaced the code of the ScalaTask’s by some dummy code that just writes text files instead and not execute my actual binary executables. It will also generate the input files if not present in the current working directory yet during setup. The workflow executes fine using the LocalEnvironment, but not in the CondorEnvironment with storageSharedLocally and a custom sharedDirectory. For some reason it does not execute the task in the Skip and therefore the output file needed by the following task is not generated, raising errors such as: May 15, 2015 2:59:00 PM org.openmole.core.batch.refresh.JobManager $bang FINE: Error in job refresh java.io.FileNotFoundException: /vol/bitbucket/as12312/OpenMOLEStrainerCapsuleTest/dofs/reg_f3d-aff/1,2.txt (No such file or directory) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.<init>(FileInputStream.java:146) at org.openmole.tool.hash.package$.computeHash(package.scala:39) at org.openmole.core.fileservice.FileService$$anonfun$hash$1.apply(FileService.scala:51) at org.openmole.core.fileservice.FileService$$anonfun$hash$1.apply(FileService.scala:51) at scala.collection.mutable.MapLike$class.getOrElseUpdate(MapLike.scala:194) at org.openmole.core.tools.cache.AssociativeCache$$anonfun$cacheMap$1$$anon$2.scala$collection$mutable$SynchronizedMap$$super$getOrElseUpdate(AssociativeCache.scala:46) at scala.collection.mutable.SynchronizedMap$class.getOrElseUpdate(SynchronizedMap.scala:40) at org.openmole.core.tools.cache.AssociativeCache$$anonfun$cacheMap$1$$anon$2.getOrElseUpdate(AssociativeCache.scala:46) at org.openmole.core.tools.cache.AssociativeCache.cache(AssociativeCache.scala:42) at org.openmole.core.fileservice.FileService$.hash(FileService.scala:48) at org.openmole.core.batch.refresh.UploadActor$$anonfun$org$openmole$core$batch$refresh$UploadActor$$initCommunication$1$$anonfun$1.apply(UploadActor.scala:75) at org.openmole.core.batch.refresh.UploadActor$$anonfun$org$openmole$core$batch$refresh$UploadActor$$initCommunication$1$$anonfun$1.apply(UploadActor.scala:75) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:245) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:245) at scala.collection.immutable.RedBlackTree$._foreachKey(RedBlackTree.scala:109) at scala.collection.immutable.RedBlackTree$._foreachKey(RedBlackTree.scala:108) at scala.collection.immutable.RedBlackTree$.foreachKey(RedBlackTree.scala:105) at scala.collection.immutable.TreeSet.foreach(TreeSet.scala:154) at scala.collection.TraversableLike$class.map(TraversableLike.scala:245) at scala.collection.immutable.TreeSet.scala$collection$SetLike$$super$map(TreeSet.scala:53) at scala.collection.SetLike$class.map(SetLike.scala:92) at scala.collection.immutable.TreeSet.map(TreeSet.scala:53) at org.openmole.core.batch.refresh.UploadActor$$anonfun$org$openmole$core$batch$refresh$UploadActor$$initCommunication$1.apply(UploadActor.scala:75) at org.openmole.core.batch.refresh.UploadActor$$anonfun$org$openmole$core$batch$refresh$UploadActor$$initCommunication$1.apply(UploadActor.scala:65) at org.openmole.core.workspace.Workspace.withTmpFile(Workspace.scala:211) at org.openmole.core.batch.refresh.UploadActor.org$openmole$core$batch$refresh$UploadActor$$initCommunication(UploadActor.scala:65) at org.openmole.core.batch.refresh.UploadActor$$anonfun$receive$1.apply$mcV$sp(UploadActor.scala:54) at org.openmole.core.batch.refresh.UploadActor$$anonfun$receive$1.apply(UploadActor.scala:50) at org.openmole.core.batch.refresh.UploadActor$$anonfun$receive$1.apply(UploadActor.scala:50) at org.openmole.core.batch.refresh.package$.withRunFinalization(package.scala:23) at org.openmole.core.batch.refresh.UploadActor.receive(UploadActor.scala:50) at org.openmole.core.batch.refresh.JobManager$DispatcherActor$.receive(JobManager.scala:81) at org.openmole.core.batch.refresh.JobManager$$anonfun$1$$anon$1.run(JobManager.scala:63) Andreas |
RepeatStrainerCapsuleTest.scala
Description: Binary data
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