http://www.bcgsc.ca/downloads/oscar/fc4-r5037-yum-error.txt
From: DongInn Kim [mailto:[EMAIL PROTECTED]
Sent: Thu 22/06/2006 18:21
To: [EMAIL PROTECTED]
Cc: Bernard Li; [email protected]
Subject: Re: [Oscar-devel] Problem with fc4, trunk and oda
Hi,
I have tried to test oscar r5035 on FC4-x86 and
everything seems to work
fine for me.
Basically i tried three test. I know
1 and 2 are the same but I wanted
to make sure that "yum upate yum" works
fine for oscar installation on
fc4 and the yum rpm is the same.
1.
Download yum-2.4.1-1.fc4.noarch.rpm and update yum with this (rpm
-Uvh
yum-2.4.1-1.fc4.noarch.rpm).
And then copy it to
$OSCAR_HOME/packages/yume/distro/fc4-i386
(For those of you who
use oscar nightly tarball, you should copy it
to /tftpboot/oscar/fc-4-i386/
too but if you install oscar from the svn
check out and do "make install" or
"make test", then you don't need to
copy it)
2. "yum update yum" and
then copy yum-2.4.1-1.fc4.noarch.rpm
to
$OSCAR_HOME/packages/yume/distro/fc4-i386
3. Use
yum-oscar-2.4.3-1.noarch.rpm that Geoffrey checked in
today(6/22).
I copied it to
$OSCAR_HOME/packages/yume/distro/fc4-i386 and then I
modified yume/prereq.cfg
by adding the following lines
[fedora*:4:*]
perl-IO-Tty
python-urlgrabber
python-elementtree
!yum
yum-oscar
createrepo-0.4.3-5.1e
yume
I have not run into the
MySQL error and the weird ssh problems at all. :-)
The only weird thing is
that the torque rpms seem to not work properly
at the testing. So I just
tried to use the new torque rpms rebuilt on my
test machine and then the
testing was fine too.
I will check in my new torque rpms and prereq.cfg
shortly.
[EMAIL PROTECTED] yume]# cat /etc/redhat-release
Fedora Core
release 4 (Stentz)
[EMAIL PROTECTED] yume]# uname -a
Linux oscar-fc4
2.6.11-1.1369_FC4 #1 Thu Jun 2 22:55:56 EDT 2005 i686
i686 i386
GNU/Linux
Regards,
- DongInn
Performing root
tests...
Maui service
check:maui
[PASSED]
TORQUE node
check
[PASSED]
TORQUE service
check:pbs_server
[PASSED]
/home
mounts
[PASSED]
Preparing user tests...
Performing user tests...
SSH ping
test
[PASSED]
SSH
server->node
[PASSED]
SSH
node->server
[PASSED]
PVM (via
TORQUE)
[PASSED]
Open MPI (via
TORQUE)
[PASSED]
MPICH (via
TORQUE)
[PASSED]
LAM/MPI (via
TORQUE)
[PASSED]
Ganglia setup
test
[PASSED]
Ganglia node count
test
[PASSED]
TORQUE default queue
definition
[PASSED]
TORQUE Shell
Test
[PASSED]
Run APItests...
Running Installation tests for
pvm
[PASS] 2006-06-22
18:05:00
pvmd-path-ls.apt
[PASS] 2006-06-22
18:05:00
envvar-pvm_arch.apt
[PASS] 2006-06-22
18:05:00
envvar-pvm_root.apt
[PASS] 2006-06-22
18:05:00 envvar.apb
[PASS]
2006-06-22 18:05:00
pvmd-path-which.apt
[PASS] 2006-06-22
18:05:00
modulecmd-path-ls.apt
[PASS] 2006-06-22
18:05:00
pvm-module-list.apt
[PASS] 2006-06-22
18:05:01
pvm-module-show-pvm_rsh.apt
[PASS]
2006-06-22 18:05:01
pvm-module-show-pvm_arch.apt
[PASS]
2006-06-22 18:05:01
pvm-module-show-pvm_root.apt
[PASS]
2006-06-22 18:05:01
pvm-module-show.apb
[PASS] 2006-06-22
18:05:01
pvm-module.apb
[PASS] 2006-06-22
18:05:01 install_tests.apb
...Hit <ENTER> key to
exit...
[EMAIL PROTECTED] wrote:
> Quoting Bernard Li
<[EMAIL PROTECTED]>:
>
>
>> Hi
Geoffroy:
>>
>> Can you please provide how you reached this
state:
>>
>> 1) How did you invoke the
Wizard
>>
>
> install_cluster since
i said i had to re-launch
install_cluster
>
>
>> 2) Steps you executed to
reach this state
>>
>
> Just a
normal installation process, the problem seems to happen after few hours
>
(over the night in my case).
>
>
>> Perhaps
easiest way is to post your oscarinstall.log.
>>
>> I have
deleted nodes before with FC5 and didn't have any issues, haven't
>>
tried with FC4 though as far as I remember.
>>
>> P.S. Perhaps
mysqld wasn't running when you ran "Delete
Nodes"?
>>
>
> I do not think it is
a problem with the delete node step... MySQL freaked out.
> Unfortunately
it seems i do not have mysql logs.
>
>
>>
Cheers,
>>
>>
Bernard
>>
>>
>>>
-----Original Message-----
>>> From:
[EMAIL PROTECTED]
>>> [mailto:[EMAIL PROTECTED]]
On Behalf
>>> Of [EMAIL PROTECTED]
>>> Sent:
Wednesday, June 21, 2006 13:09
>>> To:
[email protected]
>>> Subject: [Oscar-devel] Problem
with fc4, trunk and oda
>>>
>>> Impossible to cleanly
delete my nodes, it seems that ODA
>>> quits
periodically
>>> (actually it is more a MySQL issue). If i
re-launch
>>> install_cluster everything
>>> seems to be
back to normal.
>>> Did someone have this problem
before?
>>>
>>> --> Update Wizard Env (as
needed)
>>> DBD::mysql::st execute failed: MySQL server has gone
away at
>>> /data/src/oscar/lib/OSCAR/oda.pm line
798.
>>> DBD::mysql::st execute failed: MySQL server has gone away
at
>>> /data/src/oscar/lib/OSCAR/oda.pm line 798.
>>>
DBD::mysql::st execute failed: MySQL server has gone away at
>>>
/data/src/oscar/lib/OSCAR/oda.pm line 798.
>>> DBD::mysql::st
execute failed: MySQL server has gone away at
>>>
/data/src/oscar/lib/OSCAR/oda.pm line
798.
>>>
>>>>>
Turning off generic services
>>>>> Executing post_clients
phase
>>>>>
>>>
No ipchains on this computer
>>> No modification to do for
ipchains
>>> --> About to run
>>>
/data/src/oscar/packages/sis/scripts/post_clients for sis
>>> using
ODA to read the OSCAR database for node and adapters
>>> information
...
>>> reading SIS database for node and adapters information
...
>>> Node oscarnode1 is listed in the OSCAR database as using
sis
>>> as the installer,
>>> but node oscarnode1 is NOT
in the SIS database, DELETING node
>>> oscarnode1
from
>>> the OSCAR database ...
>>> Done deleting node
oscarnode1 from the OSCAR database.
>>> --> About to
run
>>> /data/src/oscar/packages/switcher/scripts/post_clients
for
>>> switcher
>>> --> About to run
>>>
/data/src/oscar/packages/c3/scripts/post_clients for c3
>>> -->
About to run
>>>
/data/src/oscar/packages/kernel_picker/scripts/post_clients for
>>>
kernel_picker
>>>
>>>>>
Executing post_install
phase
>>>>>
>>>
--> About to run
>>>
/data/src/oscar/packages/ganglia/scripts/post_install for
>>>
ganglia
>>> [ganglia] Ganglia gmond configuration file
modified,
>>> re-starting daemon...
>>> Shutting down
GANGLIA
gmond:
[ OK ]
>>> Starting GANGLIA
gmond:
[ OK ]
>>> editing /etc/gmetad.conf
>>>
match: gridname\s+.*
>>> match: data_source\s+.*
>>>
[ganglia] Ganglia gmetad configuration file modified,
>>>
re-starting daemon...
>>> Shutting down GANGLIA
gmetad:
[ OK ]
>>> Starting GANGLIA
gmetad:
[ OK ]
>>> [ganglia] Starting up
apache...
>>> Stopping
httpd:
[ OK ]
>>> Starting
httpd:
[ OK ]
>>> [ganglia] Ganglia page is located
at
>>> http://ft_headnode.ornl.gov/ganglia/
>>>
--> About to run
>>>
/data/src/oscar/packages/loghost/scripts/post_install for
>>>
loghost
>>> ************************* oscar_cluster
*************************
>>> --> About to run
>>>
/data/src/oscar/packages/switcher/scripts/post_install for
>>>
switcher
>>> Setting default for tag mpi
("lam-7.1.2")
>>> Tag "mpi" does not seem to exist yet.
Skipping.
>>> --> About to run
>>>
/data/src/oscar/packages/ntpconfig/scripts/post_install for
>>>
ntpconfig
>>> Shutting down
ntpd:
[ OK ]
>>> Starting
ntpd:
[ OK ]
>>> ************************* oscar_cluster
*************************
>>> --> About to run
>>>
/data/src/oscar/packages/opium/scripts/post_install for opium
>>>
Could not find template for file switcher.ini, distro redhat
>>> If
this contains distro-specific lines, please create a template
>>> in
directory /opt/sync_files/templates
>>> image:
>>> $VAR1
= 'oscarimage';
>>> ---------------
>>> cpush returned
65280 on subcluster oscarimage
>>> Could not find template for file
gshadow, distro redhat
>>> If this contains distro-specific lines,
please create a template
>>> in directory
/opt/sync_files/templates
>>> image:
>>> $VAR1 =
'oscarimage';
>>> ---------------
>>> cpush returned
65280 on subcluster oscarimage
>>> image:
>>> $VAR1 =
'oscarimage';
>>> ---------------
>>> cpush returned
65280 on subcluster oscarimage
>>> image:
>>> $VAR1 =
'oscarimage';
>>> ---------------
>>> cpush returned
65280 on subcluster oscarimage
>>> image:
>>> $VAR1 =
'oscarimage';
>>> ---------------
>>> cpush returned
65280 on subcluster oscarimage
>>> --> About to
run
>>> /data/src/oscar/packages/oda/scripts/post_install for
oda
>>> generating the /etc/odaserver file on all oscar
clients
>>> . /etc/profile.d/c3.sh && cexec 'echo
oscar_server > /etc/odaserver'
>>> *************************
oscar_cluster *************************
>>> Cluster setup
complete!
>>>
>>>>>
Re-starting generic services
>>>>> Re-starting server
services
>>>>> Updating C3 configuration
file
>>>>> Re-starting client services on remaining
nodes
>>>>>
>>>
Use of uninitialized value in concatenation (.) or string at
>>>
/data/src/oscar/lib/OSCAR/Network.pm line 43.
>>> Use of
uninitialized value in concatenation (.) or string at
>>>
/data/src/oscar/lib/OSCAR/DelNode.pm line 197.
>>> Use of
uninitialized value in string eq at
>>>
/data/src/oscar/lib/OSCAR/DelNode.pm
>>> line 199.
>>>
Running mkdhcpconf
>>> Option interface requires an
argument
>>> usage: mkdhcpconf
<options>
>>>
>>>
options
>>> --outfile
<name> the filename to write the
output to
>>> --interface
<name> the server's network interface
to
>>> listen on.
>>> (default,
eth0)
>>> --bootfile
<file> the bootfile to serve to
clients.
>>> (default,
>>>
/tftpboot/pxelinux.bin)
>>> --gateway
<host> the default route for the
machines
>>> --domain
<domain> the domain of the
machines
>>> (default, server
domain)
>>> --multicast
<yes> to enable
multicastng
>>> --nameservers
<servers> a comma delimited list of
nameservers.
>>> -v,
--verbose massive
verbose output
>>>
>>>
>>> Tk::Error: Failed
to run mkdhcpconf -o /etc/dhcpd.conf --interface=
>>>
--gateway=192.168.1.1 at
>>>
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/Tk.pm
>>>
line 247
>>> Carp::croak at /usr/lib/perl5/5.8.6/Carp.pm line
269
>>> OSCAR::DelNode::delnodes at
>>>
/data/src/oscar/lib/OSCAR/DelNode.pm line 204
>>> Tk callback
for .toplevel.button
>>> Tk::__ANON__ at
>>>
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/Tk.pm
>>>
line 247
>>> Tk::Button::butUp at
>>>
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/Tk/Bu
>>>
tton.pm line 111
>>>
<ButtonRelease-1>
>>> (command bound to
event)
>>>
>>>
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_______________________________________________
>>> Oscar-devel
mailing list
>>> [email protected]
>>>
https://lists.sourceforge.net/lists/listinfo/oscar-devel
>>>
>>>
>
>
>
>
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_______________________________________________
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>
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