mysqladmin -u root -ppass processlist can tell you what's going on with mysql 
right now. 

Are you using RADIUS? If so, the default bandwidth accounting can be very 
expensive, especially when looking at node details or triggering an email about 
a violation (any violation). I throw the data away with something like: 

delete from radacct where acctstoptime < DATE_SUB(curdate(), INTERVAL 7 DAY) or 
(acctstarttime < DATE_SUB(curdate(), INTERVAL 10 DAY AND acctstoptime IS NULL); 
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