Anna, Has your machine been opened or had anything changed inside recently ? Or did this show up only after the OS change ? I wonder if you have a bad SCSI ribbon cable . Or possibly dirty SCSI connectors. You might try wiggling the ribbon cable gently at both ends to see if anything changes. Or , with the power unplugged, pull the cable carefully from the machine and using electronic contact cleaner thoroughly on the connectors and pins at both ends. You might also want to pull the CPU card and clean it's contact strip too. Anyway , hardware problems sometimes seem like software problems.
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