I've used sharpies with no ill effects. They do have a ability to
write on anything and a tendency to bleed through porous materials,
not to mention an odor of xylene, all of which are a bit disquieting.
Recently I found a Staedtler felt tip specifically recommended for
writing on CDs.
<http://www.staedtler.com/Lumocolor_CD_DVD_pen_gb.Staedtler?ActiveID=2318>
They say you can leave the top off for days and they won't dry out.
Haven't tried it but I know that sharpies don't work that way.
--
Alan P. Hayes
Meaning and Form: Writing, Editing and Document Design
Pittsfield, Massachusetts
Photographs at
http://www.ahayesphoto.com/americandead/index.htm