http://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2015/03/01/examples_master_arch-linux-pkgs-opt_crank.log
******* Testing: testexamples_ELEMENTAL ******* 0a1,55 > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Object is in wrong state > [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [1]PETSC ERROR: Object is in wrong state > [1]PETSC ERROR: C != D > [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [1]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d GIT > Date: 2015-02-28 21:26:35 -0600 > [1]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc Sun Mar > 1 14:11:43 2015 > [1]PETSC ERROR: Configure options --with-debugging=0 --with-cc=mpicc.openmpi > --with-cxx=mpicxx.openmpi --with-fc=mpif90.openmpi > --with-mpiexec=mpiexec.openmpi --download-fblaslapack=1 --download-hypre=1 > --download-cmake=1 --download-metis=1 --download-parmetis=1 > --download-ptscotch=1 --download-suitesparse=1 --download-triangle=1 > --download-superlu=1 --download-superlu_dist=1 --download-scalapack=1 > --download-mumps=1 --download-elemental=1 --with-cxx-dialect=C++11 > --download-spai=1 --download-parms=1 --download-moab=1 --download-chaco=1 > --download-saws --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > -PETSC_DIR=/sandbox/petsc/petsc.clone > [1]PETSC ERROR: #1 main() line 67 in > /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > [2]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [2]PETSC ERROR: Object is in wrong state > [2]PETSC ERROR: C != D > [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [2]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d GIT > Date: 2015-02-28 21:26:35 -0600 > [2]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc Sun Mar > 1 14:11:43 2015 > [2]PETSC ERROR: Configure options --with-debugging=0 --with-cc=mpicc.openmpi > --with-cxx=mpicxx.openmpi --with-fc=mpif90.openmpi > --with-mpiexec=mpiexec.openmpi --download-fblaslapack=1 --download-hypre=1 > --download-cmake=1 --download-metis=1 --download-parmetis=1 > --download-ptscotch=1 --download-suitesparse=1 --download-triangle=1 > --download-superlu=1 --download-superlu_dist=1 --download-scalapack=1 > --download-mumps=1 --download-elemental=1 --with-cxx-dialect=C++11 > --download-spai=1 --download-parms=1 --download-moab=1 --download-chaco=1 > --download-saws --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > -PETSC_DIR=/sandbox/petsc/petsc.clone > [2]PETSC ERROR: #1 main() line 67 in > /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > [2]PETSC ERROR: PETSc Option Table entries: > [2]PETSC ERROR: -display 140.221.10.20:0.0 > [2]PETSC ERROR: -malloc_dump > C != D > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [0]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d GIT > Date: 2015-02-28 21:26:35 -0600 > [0]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc Sun Mar > 1 14:11:43 2015 > [0]PETSC ERROR: Configure options --with-debugging=0 --with-cc=mpicc.openmpi > --with-cxx=mpicxx.openmpi --with-fc=mpif90.openmpi > --with-mpiexec=mpiexec.openmpi --download-fblaslapack=1 --download-hypre=1 > --download-cmake=1 --download-metis=1 --download-parmetis=1 > --download-ptscotch=1 --download-suitesparse=1 --download-triangle=1 > --download-superlu=1 --download-superlu_dist=1 --download-scalapack=1 > --download-mumps=1 --download-elemental=1 --with-cxx-dialect=C++11 > --download-spai=1 --download-parms=1 --download-moab=1 --download-chaco=1 > --download-saws --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > -PETSC_DIR=/sandbox/petsc/petsc.clone > [0]PETSC ERROR: #1 main() line 67 in > /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > [0]PETSC ERROR: PETSc Option Table entries: > [0]PETSC ERROR: -display 140.221.10.20:0.0 > [0]PETSC ERROR: -malloc_dump > [0]PETSC ERROR: -mat_type elemental > [0]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected] > [1]PETSC ERROR: PETSc Option Table entries: > [1]PETSC ERROR: -display 140.221.10.20:0.0 > [1]PETSC ERROR: -malloc_dump > [1]PETSC ERROR: -mat_type elemental > [1]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected] > [2]PETSC ERROR: -mat_type elemental > [2]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected] > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD > with errorcode 73. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > mpiexec.openmpi has exited due to process rank 2 with PID 21714 on > node crank exiting without calling "finalize". This may > have caused other processes in the application to be > terminated by signals sent by mpiexec.openmpi (as reported here). > -------------------------------------------------------------------------- > [crank:21711] 2 more processes have sent help message help-mpi-api.txt / > mpi-abort > [crank:21711] Set MCA parameter "orte_base_help_aggregate" to 0 to see all > help / error messages /sandbox/petsc/petsc.clone/src/mat/examples/tests Possible problem with ex104_elemental_2, diffs above ========================================= 6c6,30 < Test LU Solver --- > terminate called after throwing an instance of 'std::logic_error' > what(): A was not numerically HPD > > [crank:21810] *** Process received signal *** > [crank:21810] Signal: Aborted (6) > [crank:21810] Signal code: (-6) > [crank:21810] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) > [0x2b997a66bcb0] > [crank:21810] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > [0x2b997a8af0d5] > [crank:21810] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > [0x2b997a8b283b] > [crank:21810] [ 3] > /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x175) > [0x2b9976a592d5] > [crank:21810] [ 4] > /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e336) > [0x2b9976a57336] > [crank:21810] [ 5] > /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e381) > [0x2b9976a57381] > [crank:21810] [ 6] > /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e598) > [0x2b9976a57598] > [crank:21810] [ 7] > /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El10LogicErrorIJPKcEEEvDpT_+0xaa) > [0x2b9974d9dffa] > [crank:21810] [ 8] > /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El8CholeskyIdEEvNS_14UpperOrLowerNS12UpperOrLowerERNS_6MatrixIT_EE+0x281) > [0x2b997557b391] > [crank:21810] [ 9] > /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El8cholesky5UVar3IdEEvRNS_18AbstractDistMatrixIT_EE+0x20c) > [0x2b997558460c] > [crank:21810] [10] > /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libpetsc.so.3.05(+0x56fd37) > [0x2b9973546d37] > [crank:21810] [11] > /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libpetsc.so.3.05(MatCholeskyFactor+0x230) > [0x2b99732a79aa] > [crank:21810] [12] ./ex145(main+0x24b7) [0x4044ff] > [crank:21810] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) > [0x2b997a89a76d] > [crank:21810] [14] ./ex145() [0x401f59] > [crank:21810] *** End of error message *** > -------------------------------------------------------------------------- > mpiexec.openmpi noticed that process rank 5 with PID 21810 on node crank > exited on signal 6 (Aborted). > -------------------------------------------------------------------------- /sandbox/petsc/petsc.clone/src/mat/examples/tests Possible problem with ex145_2, diffs above =========================================
