I don't think anyone else uses this script - so no one maintains it :) satish
On Mon, 2 Mar 2015, Barry Smith wrote: > > > On Mar 2, 2015, at 5:43 PM, Satish Balay <[email protected]> wrote: > > > > Well all linux [test] boxes are equivalent. But each of us might have > > different soft env than whats in petsc account. > > Sure; thus one should be able to trivially log in as the petsc account is > used for that particular test. like the bin/maint/petscgoto script which > likely does not work. > > Barry > > > > > > > I'll check if I can reproduce. Perhaps its because of some inconsistant > > software env.. > > [system openmpi + gcc-4.9] > > > > Satish > > > > > > On Mon, 2 Mar 2015, Barry Smith wrote: > > > >> > >> Run with valgrind? > >> > >> Run on the same machine as test actually fails on? Yes, there should be > >> a trivial way for all of us to access all the test machines to debug stuff! > >> > >> Barry > >> > >>> On Mar 2, 2015, at 5:36 PM, [email protected] wrote: > >>> > >>> I cannot reproduce it, even with same configure options on petsc machine: > >>> > >>> Configure Options: --configModules=PETSc.Configure > >>> --optionsModule=config.compilerOptions --download-metis > >>> --download-openmpich --with-debugging=0 --with-cc=mpicc.openmpi > >>> --with-cxx=mpicxx.openmpi --with-fc=mpif90.openmpi > >>> --with-mpiexec=mpiexec.openmpi --download-fblaslapack=1 --download-mumps > >>> --download-parmetis --download-scalapack --download-elemental > >>> --with-cxx-dialect=C++11 --download-cmake PETSC_ARCH=arch-openmpi-o > >>> > >>> Any suggestion? > >>> > >>> Hong > >>> > >>> On Mon, Mar 2, 2015 at 2:34 PM, Barry Smith <[email protected]> wrote: > >>> http://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2015/03/01/examples_master_arch-linux-pkgs-opt_crank.log > >>> > >>> ******* Testing: testexamples_ELEMENTAL ******* > >>> 0a1,55 > >>>> [0]PETSC ERROR: --------------------- Error Message > >>>> -------------------------------------------------------------- > >>>> [0]PETSC ERROR: Object is in wrong state > >>>> [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message > >>>> -------------------------------------------------------------- > >>>> [1]PETSC ERROR: Object is in wrong state > >>>> [1]PETSC ERROR: C != D > >>>> [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>> for trouble shooting. > >>>> [1]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d > >>>> GIT Date: 2015-02-28 21:26:35 -0600 > >>>> [1]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc > >>>> Sun Mar 1 14:11:43 2015 > >>>> [1]PETSC ERROR: Configure options --with-debugging=0 > >>>> --with-cc=mpicc.openmpi --with-cxx=mpicxx.openmpi > >>>> --with-fc=mpif90.openmpi --with-mpiexec=mpiexec.openmpi > >>>> --download-fblaslapack=1 --download-hypre=1 --download-cmake=1 > >>>> --download-metis=1 --download-parmetis=1 --download-ptscotch=1 > >>>> --download-suitesparse=1 --download-triangle=1 --download-superlu=1 > >>>> --download-superlu_dist=1 --download-scalapack=1 --download-mumps=1 > >>>> --download-elemental=1 --with-cxx-dialect=C++11 --download-spai=1 > >>>> --download-parms=1 --download-moab=1 --download-chaco=1 --download-saws > >>>> --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > >>>> -PETSC_DIR=/sandbox/petsc/petsc.clone > >>>> [1]PETSC ERROR: #1 main() line 67 in > >>>> /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > >>>> [2]PETSC ERROR: --------------------- Error Message > >>>> -------------------------------------------------------------- > >>>> [2]PETSC ERROR: Object is in wrong state > >>>> [2]PETSC ERROR: C != D > >>>> [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>> for trouble shooting. > >>>> [2]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d > >>>> GIT Date: 2015-02-28 21:26:35 -0600 > >>>> [2]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc > >>>> Sun Mar 1 14:11:43 2015 > >>>> [2]PETSC ERROR: Configure options --with-debugging=0 > >>>> --with-cc=mpicc.openmpi --with-cxx=mpicxx.openmpi > >>>> --with-fc=mpif90.openmpi --with-mpiexec=mpiexec.openmpi > >>>> --download-fblaslapack=1 --download-hypre=1 --download-cmake=1 > >>>> --download-metis=1 --download-parmetis=1 --download-ptscotch=1 > >>>> --download-suitesparse=1 --download-triangle=1 --download-superlu=1 > >>>> --download-superlu_dist=1 --download-scalapack=1 --download-mumps=1 > >>>> --download-elemental=1 --with-cxx-dialect=C++11 --download-spai=1 > >>>> --download-parms=1 --download-moab=1 --download-chaco=1 --download-saws > >>>> --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > >>>> -PETSC_DIR=/sandbox/petsc/petsc.clone > >>>> [2]PETSC ERROR: #1 main() line 67 in > >>>> /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > >>>> [2]PETSC ERROR: PETSc Option Table entries: > >>>> [2]PETSC ERROR: -display 140.221.10.20:0.0 > >>>> [2]PETSC ERROR: -malloc_dump > >>>> C != D > >>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>> for trouble shooting. > >>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2131-g5620d6d > >>>> GIT Date: 2015-02-28 21:26:35 -0600 > >>>> [0]PETSC ERROR: ./ex104 on a arch-linux-pkgs-opt named crank by petsc > >>>> Sun Mar 1 14:11:43 2015 > >>>> [0]PETSC ERROR: Configure options --with-debugging=0 > >>>> --with-cc=mpicc.openmpi --with-cxx=mpicxx.openmpi > >>>> --with-fc=mpif90.openmpi --with-mpiexec=mpiexec.openmpi > >>>> --download-fblaslapack=1 --download-hypre=1 --download-cmake=1 > >>>> --download-metis=1 --download-parmetis=1 --download-ptscotch=1 > >>>> --download-suitesparse=1 --download-triangle=1 --download-superlu=1 > >>>> --download-superlu_dist=1 --download-scalapack=1 --download-mumps=1 > >>>> --download-elemental=1 --with-cxx-dialect=C++11 --download-spai=1 > >>>> --download-parms=1 --download-moab=1 --download-chaco=1 --download-saws > >>>> --with-no-output -PETSC_ARCH=arch-linux-pkgs-opt > >>>> -PETSC_DIR=/sandbox/petsc/petsc.clone > >>>> [0]PETSC ERROR: #1 main() line 67 in > >>>> /sandbox/petsc/petsc.clone/src/mat/examples/tests/ex104.c > >>>> [0]PETSC ERROR: PETSc Option Table entries: > >>>> [0]PETSC ERROR: -display 140.221.10.20:0.0 > >>>> [0]PETSC ERROR: -malloc_dump > >>>> [0]PETSC ERROR: -mat_type elemental > >>>> [0]PETSC ERROR: ----------------End of Error Message -------send entire > >>>> error message to [email protected] > >>>> [1]PETSC ERROR: PETSc Option Table entries: > >>>> [1]PETSC ERROR: -display 140.221.10.20:0.0 > >>>> [1]PETSC ERROR: -malloc_dump > >>>> [1]PETSC ERROR: -mat_type elemental > >>>> [1]PETSC ERROR: ----------------End of Error Message -------send entire > >>>> error message to [email protected] > >>>> [2]PETSC ERROR: -mat_type elemental > >>>> [2]PETSC ERROR: ----------------End of Error Message -------send entire > >>>> error message to [email protected] > >>>> -------------------------------------------------------------------------- > >>>> MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD > >>>> with errorcode 73. > >>>> > >>>> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > >>>> You may or may not see output from other processes, depending on > >>>> exactly when Open MPI kills them. > >>>> -------------------------------------------------------------------------- > >>>> -------------------------------------------------------------------------- > >>>> mpiexec.openmpi has exited due to process rank 2 with PID 21714 on > >>>> node crank exiting without calling "finalize". This may > >>>> have caused other processes in the application to be > >>>> terminated by signals sent by mpiexec.openmpi (as reported here). > >>>> -------------------------------------------------------------------------- > >>>> [crank:21711] 2 more processes have sent help message help-mpi-api.txt / > >>>> mpi-abort > >>>> [crank:21711] Set MCA parameter "orte_base_help_aggregate" to 0 to see > >>>> all help / error messages > >>> /sandbox/petsc/petsc.clone/src/mat/examples/tests > >>> Possible problem with ex104_elemental_2, diffs above > >>> ========================================= > >>> 6c6,30 > >>> < Test LU Solver > >>> --- > >>>> terminate called after throwing an instance of 'std::logic_error' > >>>> what(): A was not numerically HPD > >>>> > >>>> [crank:21810] *** Process received signal *** > >>>> [crank:21810] Signal: Aborted (6) > >>>> [crank:21810] Signal code: (-6) > >>>> [crank:21810] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) > >>>> [0x2b997a66bcb0] > >>>> [crank:21810] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) > >>>> [0x2b997a8af0d5] > >>>> [crank:21810] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b) > >>>> [0x2b997a8b283b] > >>>> [crank:21810] [ 3] > >>>> /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x175) > >>>> [0x2b9976a592d5] > >>>> [crank:21810] [ 4] > >>>> /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e336) > >>>> [0x2b9976a57336] > >>>> [crank:21810] [ 5] > >>>> /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e381) > >>>> [0x2b9976a57381] > >>>> [crank:21810] [ 6] > >>>> /nfs/software/linux-ubuntu_precise_amd64/apps/packages/gcc-4.9.0/lib64/libstdc++.so.6(+0x5e598) > >>>> [0x2b9976a57598] > >>>> [crank:21810] [ 7] > >>>> /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El10LogicErrorIJPKcEEEvDpT_+0xaa) > >>>> [0x2b9974d9dffa] > >>>> [crank:21810] [ 8] > >>>> /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El8CholeskyIdEEvNS_14UpperOrLowerNS12UpperOrLowerERNS_6MatrixIT_EE+0x281) > >>>> [0x2b997557b391] > >>>> [crank:21810] [ 9] > >>>> /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libEl.so(_ZN2El8cholesky5UVar3IdEEvRNS_18AbstractDistMatrixIT_EE+0x20c) > >>>> [0x2b997558460c] > >>>> [crank:21810] [10] > >>>> /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libpetsc.so.3.05(+0x56fd37) > >>>> [0x2b9973546d37] > >>>> [crank:21810] [11] > >>>> /sandbox/petsc/petsc.clone/arch-linux-pkgs-opt/lib/libpetsc.so.3.05(MatCholeskyFactor+0x230) > >>>> [0x2b99732a79aa] > >>>> [crank:21810] [12] ./ex145(main+0x24b7) [0x4044ff] > >>>> [crank:21810] [13] > >>>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b997a89a76d] > >>>> [crank:21810] [14] ./ex145() [0x401f59] > >>>> [crank:21810] *** End of error message *** > >>>> -------------------------------------------------------------------------- > >>>> mpiexec.openmpi noticed that process rank 5 with PID 21810 on node crank > >>>> exited on signal 6 (Aborted). > >>>> -------------------------------------------------------------------------- > >>> /sandbox/petsc/petsc.clone/src/mat/examples/tests > >>> Possible problem with ex145_2, diffs above > >>> ========================================= > >>> > >>> > >> > >> > > > >
