I can not even run a job here. This is from an interactive shell: 64-pgi ex19-batch1:~/petsc/src/snes/examples/tutorials> make PETSC_DIR=/autofs/nccs-svm1_home1/adams/petsc PETSC_ARCH=arch-titan-dbg6 cc -o ex19.o -c -fast -mp -I/autofs/nccs-svm1_home1/adams/petsc/include -I/autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/include -I/ccs/proj/env003/petscv3.9-dbg64-pgi/include `pwd`/ex19.c cc -fast -mp -o ex19 ex19.o -L/autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib -Wl,-rpath,/ccs/proj/env003/petscv3.9-dbg64-pgi/lib -L/ccs/proj/env003/petscv3.9-dbg64-pgi/lib -lpetsc -lHYPRE -lflapack -lfblas -lparmetis -lmetis -lstdc++ -ldl /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(dlimpl.o): In function `PetscDLOpen': /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:54: warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(send.o): In function `PetscOpenSocket': /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:106: warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking adams@titan-batch1:~/petsc/src/snes/examples/tutorials> aprun -n 1 ./ex19 [NID 02258] 2018-06-29 07:45:09 Exec ./ex19 failed: chdir /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such file or directory adams@titan-batch1:~/petsc/src/snes/examples/tutorials>
Seung-Hoe runs here, maybe he can give me advice on what is wrong here. On Thu, Jun 28, 2018 at 7:53 PM Smith, Barry F. <[email protected]> wrote: > > 1) We need to get this PGI compiler into our regular testing. It doesn't > like some Fortran code the other compilers are ok with > > 2) Mark, likely you just need to submit the examples manually to run > them. cd src/snes/examples/tutorials; make ex19 then use the batch system > to submit the example > > Barry > > > > On Jun 28, 2018, at 5:35 PM, Mark Adams <[email protected]> wrote: > > > > I am trying to run on Titan and I am having problems running the tests. > I get this output. It says it can not find a directory, but I do an ls in > after the error and you can see that it is there. > > > > I've attached the logs. > > > > Any ideas? > > Thanks, > > Mark > > > > adams@titan-login6:~/petsc> make > PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi PETSC_ARCH="" test > > Running test examples to verify correct installation > > Using PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi and PETSC_ARCH= > > *******************Error detected during compile or > link!******************* > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > /ccs/home/adams/petsc/src/snes/examples/tutorials ex19 > > > ********************************************************************************* > > cc -o ex19.o -c -fast -mp > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include `pwd`/ex19.c > > cc -fast -mp -o ex19 ex19.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib > -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib > -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack > -lfblas -lparmetis -lmetis -lstdc++ -ldl > > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(dlimpl.o): In > function `PetscDLOpen': > > /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:53: warning: > Using 'dlopen' in statically linked applications requires at runtime the > shared libraries from the glibc version used for linking > > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(send.o): In function > `PetscOpenSocket': > > > /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:101: > warning: Using 'gethostbyname' in statically linked applications requires > at runtime the shared libraries from the glibc version used for linking > > /bin/rm -f ex19.o > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI > process > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > [NID 18525] 2018-06-28 18:25:39 Exec ./ex19 failed: chdir > /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such > file or directory > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI > processes > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > [NID 18525] 2018-06-28 18:25:46 Exec ./ex19 failed: chdir > /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such > file or directory > > 1,5c1 > > < lid velocity = 0.0016, prandtl # = 1., grashof # = 1. > > < 0 SNES Function norm 0.0406612 > > < 1 SNES Function norm 4.12227e-06 > > < 2 SNES Function norm 6.098e-11 > > < Number of SNES iterations = 2 > > --- > > > [NID 18525] 2018-06-28 18:25:55 Exec ./ex19 failed: chdir > /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such > file or directory > > /ccs/home/adams/petsc/src/snes/examples/tutorials > > Possible problem with ex19_hypre, diffs above > > ========================================= > > *******************Error detected during compile or > link!******************* > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > /ccs/home/adams/petsc/src/snes/examples/tutorials ex5f > > ********************************************************* > > ftn -c -fast -mp -I/ccs/proj/env003/petscv3.9-opt64-pgi/include > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -o ex5f.o ex5f.F90 > > PGF90-S-0155-Could not resolve generic procedure dmdacreate2d (ex5f.F90: > 120) > > PGF90-S-0450-Argument number 2 to snesgetiterationnumber: kind mismatch > (ex5f.F90: 180) > > 0 inform, 0 warnings, 2 severes, 0 fatal for main > > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal > (ex5f.F90: 464) > > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal > (ex5f.F90: 477) > > 0 inform, 0 warnings, 2 severes, 0 fatal for formjacobianlocal > > gmake[3]: [ex5f.o] Error 2 (ignored) > > ftn -fast -mp -o ex5f ex5f.o > -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib > -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib > -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack > -lfblas -lparmetis -lmetis -lstdc++ -ldl > > /usr/bin/ld: cannot find ex5f.o: No such file or directory > > /usr/bin/sha1sum: ex5f: No such file or directory > > gmake[3]: [ex5f] Error 2 (ignored) > > /bin/rm -f ex5f.o > > Completed test examples > > adams@titan-login6:~/petsc> ll > /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials > > total 1864 > > -rw-rw-r-- 1 adams adams 11134 May 3 14:26 ex1.c > > drwxr-xr-x 3 adams adams 4096 May 3 14:26 ex10d > > -rw-rw-r-- 1 adams adams 92615 May 3 14:26 ex12.c > > -rw-r--r-- 1 adams adams 19324 Jun 21 17:59 ex13.c > > -rw-rw-r-- 1 adams adams 20550 May 3 14:26 ex14.c > > > > <make.log><configure.log> > >
