Thanks all, I knew this but its been a while since I've run on this file setup.
On Fri, Jun 29, 2018 at 9:15 AM Seung-Hoe Ku <[email protected]> wrote: > Try copying files to scratch file system. > Home is not available when executive batch job. Probably interactive > she'll too. > > On Fri, Jun 29, 2018 at 7:47 AM Mark Adams <[email protected]> wrote: > >> I can not even run a job here. This is from an interactive shell: >> >> 64-pgi ex19-batch1:~/petsc/src/snes/examples/tutorials> make >> PETSC_DIR=/autofs/nccs-svm1_home1/adams/petsc PETSC_ARCH=arch-titan-dbg6 >> cc -o ex19.o -c -fast -mp -I/autofs/nccs-svm1_home1/adams/petsc/include >> -I/autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/include >> -I/ccs/proj/env003/petscv3.9-dbg64-pgi/include `pwd`/ex19.c >> cc -fast -mp -o ex19 ex19.o >> -L/autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib >> -Wl,-rpath,/ccs/proj/env003/petscv3.9-dbg64-pgi/lib >> -L/ccs/proj/env003/petscv3.9-dbg64-pgi/lib -lpetsc -lHYPRE -lflapack >> -lfblas -lparmetis -lmetis -lstdc++ -ldl >> /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(dlimpl.o): >> In function `PetscDLOpen': >> /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:54: warning: >> Using 'dlopen' in statically linked applications requires at runtime the >> shared libraries from the glibc version used for linking >> /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(send.o): >> In function `PetscOpenSocket': >> /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:106: >> warning: Using 'gethostbyname' in statically linked applications requires >> at runtime the shared libraries from the glibc version used for linking >> adams@titan-batch1:~/petsc/src/snes/examples/tutorials> aprun -n 1 ./ex19 >> [NID 02258] 2018-06-29 07:45:09 Exec ./ex19 failed: chdir >> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such >> file or directory >> adams@titan-batch1:~/petsc/src/snes/examples/tutorials> >> >> Seung-Hoe runs here, maybe he can give me advice on what is wrong here. >> >> >> On Thu, Jun 28, 2018 at 7:53 PM Smith, Barry F. <[email protected]> >> wrote: >> >>> >>> 1) We need to get this PGI compiler into our regular testing. It >>> doesn't like some Fortran code the other compilers are ok with >>> >>> 2) Mark, likely you just need to submit the examples manually to run >>> them. cd src/snes/examples/tutorials; make ex19 then use the batch system >>> to submit the example >>> >>> Barry >>> >>> >>> > On Jun 28, 2018, at 5:35 PM, Mark Adams <[email protected]> wrote: >>> > >>> > I am trying to run on Titan and I am having problems running the >>> tests. I get this output. It says it can not find a directory, but I do an >>> ls in after the error and you can see that it is there. >>> > >>> > I've attached the logs. >>> > >>> > Any ideas? >>> > Thanks, >>> > Mark >>> > >>> > adams@titan-login6:~/petsc> make >>> PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi PETSC_ARCH="" test >>> > Running test examples to verify correct installation >>> > Using PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi and PETSC_ARCH= >>> > *******************Error detected during compile or >>> link!******************* >>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> > /ccs/home/adams/petsc/src/snes/examples/tutorials ex19 >>> > >>> ********************************************************************************* >>> > cc -o ex19.o -c -fast -mp >>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include `pwd`/ex19.c >>> > cc -fast -mp -o ex19 ex19.o >>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>> -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack >>> -lfblas -lparmetis -lmetis -lstdc++ -ldl >>> > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(dlimpl.o): In >>> function `PetscDLOpen': >>> > /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:53: warning: >>> Using 'dlopen' in statically linked applications requires at runtime the >>> shared libraries from the glibc version used for linking >>> > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(send.o): In >>> function `PetscOpenSocket': >>> > >>> /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:101: >>> warning: Using 'gethostbyname' in statically linked applications requires >>> at runtime the shared libraries from the glibc version used for linking >>> > /bin/rm -f ex19.o >>> > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 >>> MPI process >>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> > [NID 18525] 2018-06-28 18:25:39 Exec ./ex19 failed: chdir >>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such >>> file or directory >>> > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 >>> MPI processes >>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> > [NID 18525] 2018-06-28 18:25:46 Exec ./ex19 failed: chdir >>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such >>> file or directory >>> > 1,5c1 >>> > < lid velocity = 0.0016, prandtl # = 1., grashof # = 1. >>> > < 0 SNES Function norm 0.0406612 >>> > < 1 SNES Function norm 4.12227e-06 >>> > < 2 SNES Function norm 6.098e-11 >>> > < Number of SNES iterations = 2 >>> > --- >>> > > [NID 18525] 2018-06-28 18:25:55 Exec ./ex19 failed: chdir >>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such >>> file or directory >>> > /ccs/home/adams/petsc/src/snes/examples/tutorials >>> > Possible problem with ex19_hypre, diffs above >>> > ========================================= >>> > *******************Error detected during compile or >>> link!******************* >>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> > /ccs/home/adams/petsc/src/snes/examples/tutorials ex5f >>> > ********************************************************* >>> > ftn -c -fast -mp -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -o ex5f.o ex5f.F90 >>> > PGF90-S-0155-Could not resolve generic procedure dmdacreate2d >>> (ex5f.F90: 120) >>> > PGF90-S-0450-Argument number 2 to snesgetiterationnumber: kind >>> mismatch (ex5f.F90: 180) >>> > 0 inform, 0 warnings, 2 severes, 0 fatal for main >>> > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal >>> (ex5f.F90: 464) >>> > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal >>> (ex5f.F90: 477) >>> > 0 inform, 0 warnings, 2 severes, 0 fatal for formjacobianlocal >>> > gmake[3]: [ex5f.o] Error 2 (ignored) >>> > ftn -fast -mp -o ex5f ex5f.o >>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>> -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack >>> -lfblas -lparmetis -lmetis -lstdc++ -ldl >>> > /usr/bin/ld: cannot find ex5f.o: No such file or directory >>> > /usr/bin/sha1sum: ex5f: No such file or directory >>> > gmake[3]: [ex5f] Error 2 (ignored) >>> > /bin/rm -f ex5f.o >>> > Completed test examples >>> > adams@titan-login6:~/petsc> ll >>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials >>> > total 1864 >>> > -rw-rw-r-- 1 adams adams 11134 May 3 14:26 ex1.c >>> > drwxr-xr-x 3 adams adams 4096 May 3 14:26 ex10d >>> > -rw-rw-r-- 1 adams adams 92615 May 3 14:26 ex12.c >>> > -rw-r--r-- 1 adams adams 19324 Jun 21 17:59 ex13.c >>> > -rw-rw-r-- 1 adams adams 20550 May 3 14:26 ex14.c >>> > >>> > <make.log><configure.log> >>> >>> -- > Sent from Iphone >
