Hi Mark, I've got an OLCF account but don't have access to Titan. Would it be helpful for me to apply to get on whatever allocation you are using so I can poke around at this stuff? (If so, send me a message off list with details of what I should apply for.)
Hopefully I could get on there faster than it took them to enable me on Summit. I had volunteered to help with issues on Summit some time ago, but it took so long for them to enable my account on there that I didn't matter by then. --Richard On Fri, Jun 29, 2018 at 7:12 AM, Mark Adams <[email protected]> wrote: > Thanks all, I knew this but its been a while since I've run on this file > setup. > > On Fri, Jun 29, 2018 at 9:15 AM Seung-Hoe Ku <[email protected]> wrote: > >> Try copying files to scratch file system. >> Home is not available when executive batch job. Probably interactive >> she'll too. >> >> On Fri, Jun 29, 2018 at 7:47 AM Mark Adams <[email protected]> wrote: >> >>> I can not even run a job here. This is from an interactive shell: >>> >>> 64-pgi ex19-batch1:~/petsc/src/snes/examples/tutorials> make >>> PETSC_DIR=/autofs/nccs-svm1_home1/adams/petsc PETSC_ARCH=arch-titan-dbg6 >>> cc -o ex19.o -c -fast -mp -I/autofs/nccs-svm1_home1/adams/petsc/include >>> -I/autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/include >>> -I/ccs/proj/env003/petscv3.9-dbg64-pgi/include `pwd`/ex19.c >>> cc -fast -mp -o ex19 ex19.o -L/autofs/nccs-svm1_home1/ >>> adams/petsc/arch-titan-dbg64-pgi/lib >>> -Wl,-rpath,/ccs/proj/env003/petscv3.9-dbg64-pgi/lib >>> -L/ccs/proj/env003/petscv3.9-dbg64-pgi/lib -lpetsc -lHYPRE -lflapack >>> -lfblas -lparmetis -lmetis -lstdc++ -ldl >>> /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(dlimpl.o): >>> In function `PetscDLOpen': >>> /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:54: warning: >>> Using 'dlopen' in statically linked applications requires at runtime the >>> shared libraries from the glibc version used for linking >>> /autofs/nccs-svm1_home1/adams/petsc/arch-titan-dbg64-pgi/lib/libpetsc.a(send.o): >>> In function `PetscOpenSocket': >>> /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:106: >>> warning: Using 'gethostbyname' in statically linked applications requires >>> at runtime the shared libraries from the glibc version used for linking >>> adams@titan-batch1:~/petsc/src/snes/examples/tutorials> aprun -n 1 >>> ./ex19 >>> [NID 02258] 2018-06-29 07:45:09 Exec ./ex19 failed: chdir >>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such >>> file or directory >>> adams@titan-batch1:~/petsc/src/snes/examples/tutorials> >>> >>> Seung-Hoe runs here, maybe he can give me advice on what is wrong here. >>> >>> >>> On Thu, Jun 28, 2018 at 7:53 PM Smith, Barry F. <[email protected]> >>> wrote: >>> >>>> >>>> 1) We need to get this PGI compiler into our regular testing. It >>>> doesn't like some Fortran code the other compilers are ok with >>>> >>>> 2) Mark, likely you just need to submit the examples manually to >>>> run them. cd src/snes/examples/tutorials; make ex19 then use the batch >>>> system to submit the example >>>> >>>> Barry >>>> >>>> >>>> > On Jun 28, 2018, at 5:35 PM, Mark Adams <[email protected]> wrote: >>>> > >>>> > I am trying to run on Titan and I am having problems running the >>>> tests. I get this output. It says it can not find a directory, but I do an >>>> ls in after the error and you can see that it is there. >>>> > >>>> > I've attached the logs. >>>> > >>>> > Any ideas? >>>> > Thanks, >>>> > Mark >>>> > >>>> > adams@titan-login6:~/petsc> make >>>> > PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi >>>> PETSC_ARCH="" test >>>> > Running test examples to verify correct installation >>>> > Using PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi and PETSC_ARCH= >>>> > *******************Error detected during compile or >>>> link!******************* >>>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>>> > /ccs/home/adams/petsc/src/snes/examples/tutorials ex19 >>>> > ************************************************************ >>>> ********************* >>>> > cc -o ex19.o -c -fast -mp >>>> > -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include `pwd`/ex19.c >>>> > cc -fast -mp -o ex19 ex19.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>>> -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack >>>> -lfblas -lparmetis -lmetis -lstdc++ -ldl >>>> > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(dlimpl.o): In >>>> function `PetscDLOpen': >>>> > /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:53: >>>> warning: Using 'dlopen' in statically linked applications requires at >>>> runtime the shared libraries from the glibc version used for linking >>>> > /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(send.o): In >>>> function `PetscOpenSocket': >>>> > /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:101: >>>> warning: Using 'gethostbyname' in statically linked applications requires >>>> at runtime the shared libraries from the glibc version used for linking >>>> > /bin/rm -f ex19.o >>>> > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 >>>> MPI process >>>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>>> > [NID 18525] 2018-06-28 18:25:39 Exec ./ex19 failed: chdir >>>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No >>>> such file or directory >>>> > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 >>>> MPI processes >>>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>>> > [NID 18525] 2018-06-28 18:25:46 Exec ./ex19 failed: chdir >>>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No >>>> such file or directory >>>> > 1,5c1 >>>> > < lid velocity = 0.0016, prandtl # = 1., grashof # = 1. >>>> > < 0 SNES Function norm 0.0406612 >>>> > < 1 SNES Function norm 4.12227e-06 >>>> > < 2 SNES Function norm 6.098e-11 >>>> > < Number of SNES iterations = 2 >>>> > --- >>>> > > [NID 18525] 2018-06-28 18:25:55 Exec ./ex19 failed: chdir >>>> /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No >>>> such file or directory >>>> > /ccs/home/adams/petsc/src/snes/examples/tutorials >>>> > Possible problem with ex19_hypre, diffs above >>>> > ========================================= >>>> > *******************Error detected during compile or >>>> link!******************* >>>> > See http://www.mcs.anl.gov/petsc/documentation/faq.html >>>> > /ccs/home/adams/petsc/src/snes/examples/tutorials ex5f >>>> > ********************************************************* >>>> > ftn -c -fast -mp -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include >>>> -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -o ex5f.o ex5f.F90 >>>> > PGF90-S-0155-Could not resolve generic procedure dmdacreate2d >>>> (ex5f.F90: 120) >>>> > PGF90-S-0450-Argument number 2 to snesgetiterationnumber: kind >>>> mismatch (ex5f.F90: 180) >>>> > 0 inform, 0 warnings, 2 severes, 0 fatal for main >>>> > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal >>>> (ex5f.F90: 464) >>>> > PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal >>>> (ex5f.F90: 477) >>>> > 0 inform, 0 warnings, 2 severes, 0 fatal for formjacobianlocal >>>> > gmake[3]: [ex5f.o] Error 2 (ignored) >>>> > ftn -fast -mp -o ex5f ex5f.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>>> -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib >>>> -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack >>>> -lfblas -lparmetis -lmetis -lstdc++ -ldl >>>> > /usr/bin/ld: cannot find ex5f.o: No such file or directory >>>> > /usr/bin/sha1sum: ex5f: No such file or directory >>>> > gmake[3]: [ex5f] Error 2 (ignored) >>>> > /bin/rm -f ex5f.o >>>> > Completed test examples >>>> > adams@titan-login6:~/petsc> ll /autofs/nccs-svm1_home1/adams/ >>>> petsc/src/snes/examples/tutorials >>>> > total 1864 >>>> > -rw-rw-r-- 1 adams adams 11134 May 3 14:26 ex1.c >>>> > drwxr-xr-x 3 adams adams 4096 May 3 14:26 ex10d >>>> > -rw-rw-r-- 1 adams adams 92615 May 3 14:26 ex12.c >>>> > -rw-r--r-- 1 adams adams 19324 Jun 21 17:59 ex13.c >>>> > -rw-rw-r-- 1 adams adams 20550 May 3 14:26 ex14.c >>>> > >>>> > <make.log><configure.log> >>>> >>>> -- >> Sent from Iphone >> >
