Needs some more work
./bin/spack install petsc+hypre ==> [email protected] : externally installed in /usr/local ==> [email protected] : generating module file ==> [email protected] : registering into DB ==> [email protected] : externally installed in /usr ==> [email protected] : generating module file ==> [email protected] : registering into DB ==> Installing hdf5 ==> Fetching https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk/hdf5-1.10.3.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk ==> No patches needed for hdf5 ==> Building hdf5 [AutotoolsPackage] ==> Executing phase: 'autoreconf' ==> Executing phase: 'configure' ==> Executing phase: 'build' ==> Executing phase: 'install' ==> Successfully installed hdf5 Fetch: 4.37s. Build: 2m 5.47s. Total: 2m 9.84s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk ==> Installing veclibfort ==> Fetching https://github.com/mcg1969/vecLibFort/archive/0.4.2.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk/0.4.2.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk ==> No patches needed for veclibfort ==> Building veclibfort [Package] ==> Executing phase: 'install' ==> Successfully installed veclibfort Fetch: 1.02s. Build: 1.73s. Total: 2.75s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk ==> Installing hypre ==> Fetching https://github.com/LLNL/hypre/archive/v2.15.0.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg/v2.15.0.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg ==> No patches needed for hypre ==> Building hypre [Package] ==> Executing phase: 'install' ==> Successfully installed hypre Fetch: 1.68s. Build: 45.02s. Total: 46.70s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg ==> [email protected] : externally installed in /usr/local/bin ==> [email protected] : generating module file ==> [email protected] : registering into DB ==> Installing metis ==> Fetching http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y/metis-5.1.0.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y ==> Applied patch install_gklib_defs_rename.patch ==> Ran patch() for metis ==> Building metis [Package] ==> Executing phase: 'install' ==> Successfully installed metis Fetch: 3.86s. Build: 8.33s. Total: 12.19s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y ==> Installing parmetis ==> Fetching http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h/parmetis-4.0.3.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h ==> Applied patch enable_external_metis.patch ==> Applied patch pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch ==> Applied patch pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch ==> Building parmetis [CMakePackage] ==> Executing phase: 'cmake' ==> Executing phase: 'build' ==> Executing phase: 'install' ==> Successfully installed parmetis Fetch: 3.71s. Build: 8.08s. Total: 11.79s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h ==> [email protected] : externally installed in /usr ==> [email protected] : generating module file ==> [email protected] : registering into DB ==> Installing superlu-dist ==> Fetching https://github.com/xiaoyeli/superlu_dist/archive/v5.4.0.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn/v5.4.0.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn ==> No patches needed for superlu-dist ==> Building superlu-dist [CMakePackage] ==> Executing phase: 'cmake' ==> Executing phase: 'build' ==> Executing phase: 'install' ==> Successfully installed superlu-dist Fetch: 2.03s. Build: 22.54s. Total: 24.57s. [+] /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn ==> Installing petsc ==> Fetching http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.10.2.tar.gz ######################################################################## 100.0% ==> Staging archive: /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2.tar.gz ==> Created stage in /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b ==> No patches needed for petsc ==> Building petsc [Package] ==> Executing phase: 'install' ==> Error: ProcessError: Command exited with status 2: 'make' 'MAKE_NP=8' 1 error found in build log: 52 53 ==> 'make' 'MAKE_NP=8' 54 makefile:15: lib/petsc/conf/petscvariables: No such file or directory 55 makefile:16: /lib/petsc/conf/variables: No such file or directory 56 makefile:17: /lib/petsc/conf/rules: No such file or directory 57 makefile:18: /lib/petsc/conf/test.common: No such file or directory >> 58 make: *** No rule to make target `/lib/petsc/conf/test.common'. Stop. See build log for details: /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2/spack-build.out Then in the build log File "/private/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gn/T/barrysmith/spack-stage/spack-stage-hFL0xI/petsc-3.10.2/config/BuildSystem/nargs.py", line 360, in setValue raise ValueError('Invalid directory: '+str(dir)+' for key '+str(self.key)) =============================================================================== Configuring PETSc to compile on your system =============================================================================== ******************************************************************************* ERROR in COMMAND LINE ARGUMENT to ./configure ------------------------------------------------------------------------------- Invalid directory: /usr/include for key with-zlib-include ******************************************************************************* Apple OS doesn't come with a /usr/include > On Oct 20, 2018, at 10:47 PM, Jed Brown <[email protected]> wrote: > > We're currently maintaining a (somewhat clumsy and limited, albeit > functional) package manager in the form of the --download functionality. > What do people think of outsourcing this to Spack, which would handle > dependency resolution and report includes/libraries to PETSc? That > would enable reuse of installed packages between different PETSC_ARCH > and be more reliable regarding upgrade/downgrade when switching > branches.
