Still prefers OpenBLAS over system BLAS.
> On Oct 21, 2018, at 12:31 PM, Barry Smith <[email protected]> wrote: > > > How does one set the compiler for Spack to use. I read all of > https://spack.readthedocs.io/en/latest/getting_started.html and it showed how > to find compilers and add them to the spack compiler list but nothing about > how to tell spack to use a particular compiler? > > > >> On Oct 21, 2018, at 11:51 AM, Smith, Barry F. <[email protected]> wrote: >> >> >> Needs some more work >> >> >> ./bin/spack install petsc+hypre >> ==> [email protected] : externally installed in /usr/local >> ==> [email protected] : generating module file >> ==> [email protected] : registering into DB >> ==> [email protected] : externally installed in /usr >> ==> [email protected] : generating module file >> ==> [email protected] : registering into DB >> ==> Installing hdf5 >> ==> Fetching >> https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk/hdf5-1.10.3.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk >> ==> No patches needed for hdf5 >> ==> Building hdf5 [AutotoolsPackage] >> ==> Executing phase: 'autoreconf' >> ==> Executing phase: 'configure' >> ==> Executing phase: 'build' >> ==> Executing phase: 'install' >> ==> Successfully installed hdf5 >> Fetch: 4.37s. Build: 2m 5.47s. Total: 2m 9.84s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk >> ==> Installing veclibfort >> ==> Fetching https://github.com/mcg1969/vecLibFort/archive/0.4.2.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk/0.4.2.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk >> ==> No patches needed for veclibfort >> ==> Building veclibfort [Package] >> ==> Executing phase: 'install' >> ==> Successfully installed veclibfort >> Fetch: 1.02s. Build: 1.73s. Total: 2.75s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk >> ==> Installing hypre >> ==> Fetching https://github.com/LLNL/hypre/archive/v2.15.0.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg/v2.15.0.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg >> ==> No patches needed for hypre >> ==> Building hypre [Package] >> ==> Executing phase: 'install' >> ==> Successfully installed hypre >> Fetch: 1.68s. Build: 45.02s. Total: 46.70s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg >> ==> [email protected] : externally installed in /usr/local/bin >> ==> [email protected] : generating module file >> ==> [email protected] : registering into DB >> ==> Installing metis >> ==> Fetching >> http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y/metis-5.1.0.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y >> ==> Applied patch install_gklib_defs_rename.patch >> ==> Ran patch() for metis >> ==> Building metis [Package] >> ==> Executing phase: 'install' >> ==> Successfully installed metis >> Fetch: 3.86s. Build: 8.33s. Total: 12.19s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y >> ==> Installing parmetis >> ==> Fetching >> http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h/parmetis-4.0.3.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h >> ==> Applied patch enable_external_metis.patch >> ==> Applied patch pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch >> ==> Applied patch pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch >> ==> Building parmetis [CMakePackage] >> ==> Executing phase: 'cmake' >> ==> Executing phase: 'build' >> ==> Executing phase: 'install' >> ==> Successfully installed parmetis >> Fetch: 3.71s. Build: 8.08s. Total: 11.79s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h >> ==> [email protected] : externally installed in /usr >> ==> [email protected] : generating module file >> ==> [email protected] : registering into DB >> ==> Installing superlu-dist >> ==> Fetching https://github.com/xiaoyeli/superlu_dist/archive/v5.4.0.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn/v5.4.0.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn >> ==> No patches needed for superlu-dist >> ==> Building superlu-dist [CMakePackage] >> ==> Executing phase: 'cmake' >> ==> Executing phase: 'build' >> ==> Executing phase: 'install' >> ==> Successfully installed superlu-dist >> Fetch: 2.03s. Build: 22.54s. Total: 24.57s. >> [+] >> /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn >> ==> Installing petsc >> ==> Fetching >> http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.10.2.tar.gz >> ######################################################################## >> 100.0% >> ==> Staging archive: >> /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2.tar.gz >> ==> Created stage in >> /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b >> ==> No patches needed for petsc >> ==> Building petsc [Package] >> ==> Executing phase: 'install' >> ==> Error: ProcessError: Command exited with status 2: >> 'make' 'MAKE_NP=8' >> >> 1 error found in build log: >> 52 >> 53 ==> 'make' 'MAKE_NP=8' >> 54 makefile:15: lib/petsc/conf/petscvariables: No such file or >> directory >> 55 makefile:16: /lib/petsc/conf/variables: No such file or directory >> 56 makefile:17: /lib/petsc/conf/rules: No such file or directory >> 57 makefile:18: /lib/petsc/conf/test.common: No such file or directory >>>> 58 make: *** No rule to make target `/lib/petsc/conf/test.common'. >>>> Stop. >> >> See build log for details: >> /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2/spack-build.out >> >> Then in the build log >> >> File >> "/private/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gn/T/barrysmith/spack-stage/spack-stage-hFL0xI/petsc-3.10.2/config/BuildSystem/nargs.py", >> line 360, in setValue >> raise ValueError('Invalid directory: '+str(dir)+' for key '+str(self.key)) >> =============================================================================== >> Configuring PETSc to compile on your system >> =============================================================================== >> ******************************************************************************* >> ERROR in COMMAND LINE ARGUMENT to ./configure >> ------------------------------------------------------------------------------- >> Invalid directory: /usr/include for key with-zlib-include >> ******************************************************************************* >> >> >> Apple OS doesn't come with a /usr/include >> >> >>> On Oct 20, 2018, at 10:47 PM, Jed Brown <[email protected]> wrote: >>> >>> We're currently maintaining a (somewhat clumsy and limited, albeit >>> functional) package manager in the form of the --download functionality. >>> What do people think of outsourcing this to Spack, which would handle >>> dependency resolution and report includes/libraries to PETSc? That >>> would enable reuse of installed packages between different PETSC_ARCH >>> and be more reliable regarding upgrade/downgrade when switching >>> branches. >> >
