On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault < [email protected]> wrote:
> > Le 2013-10-30 17:45, Matthew Knepley a écrit : > > On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault < > [email protected]> wrote: > >> Hi, >> Here is the attached configure.log file. >> >> I will try the flag --with-debugging tomorrow. >> > > Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2 -xHost > -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel > > I had -O3 earlier. The error was the same. It is overwritten by the > makefile anyway if you look in the details. This is not the source of the > problem. > I know, but if you leave it there with you use --with-debugging, it could still cause the problem. > --with-dynamic-loading > --with-x=0 --with-mpi-compilers=1 > --with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel > --known-mpi-shared-libraries=1 > --with-debugging=no > --with-shared-libraries=1 > > --with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64 > Don't need this --with-scalapack=1 > > --with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include > > --with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a > Don't need this --with-blacs=1 > > --with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include > > --with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a > --download-mumps=yes > --download-ptscotch=1 > --download-superlu=yes > --download-superlu_dist=yes > --download-parmetis=yes > --download-metis=yes > --download-ml=yes > This is deprecated. Use -pc_type gamg --download-prometheus=yes > > Which part is, download-ml ? or download-hypre ? Again, this is not the > module that fails compiling however. > I do not understand the question here. ML is algebraic multigrid, similar to -pc_type gamg. Hypre has a few things in it. Matt > Maxime > > --download-hypre=yes > > Matt > >> >> Maxime >> >> Le 2013-10-30 16:49, Matthew Knepley a écrit : >> >> On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault < >> [email protected]> wrote: >> >>> Hi, >>> I am currently trying to compile PETSc 3.4.3 with ICC 14.0 and OpenMPI >>> 1.6.5 and it fails SuperLU_Dist. >>> >>> I am getting the following error : >>> >>> 68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc >>> -I/software6/mpi/openmpi/1.6.5_intel/include >>> -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost -mkl -fPIC -m64 >>> -fPIC -O3 -DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c >>> 68304 make[1]: Leaving directory >>> `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC' >>> 68305 error #13002: unexpected CFE message argument: e. The staggered >>> cosine transform may be >>> 68306 warning #13003: message verification failed for: 556; reverting to >>> internal message >>> 68307 pdgstrf.c(2672): warning #556: a value of type "int" cannot be >>> assigned to an entity of type "MPI_Request" >>> 68308 U_diag_blk_send_req[krow] = 1; /* flag outstanding >>> Isend */ >>> 68309 ^ >>> 68310 >>> 68311 pdgstrf.c(2672): warning #152: Fatal error: Trigonometric >>> Transform has failed to release the memory. >>> 68312 U_diag_blk_send_req[krow] = 1; /* flag outstanding >>> Isend */ >>> 68313 ^ >>> 68314 >>> 68315 compilation aborted for pdgstrf.c (code 1) >>> 68316 make[1]: *** [pdgstrf.o] Error 1 >>> >>> Anyone has a clue on to what might be going on ? >>> >> >> 1) Always send configure.log >> >> 2) It looks like an Intel compiler bug. Try building with >> --with-debugging first >> >> Matt >> >> >>> >>> -- >>> --------------------------------- >>> Maxime Boissonneault >>> Analyste de calcul - Calcul Québec, Université Laval >>> Ph. D. en physique >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> >> >> -- >> --------------------------------- >> Maxime Boissonneault >> Analyste de calcul - Calcul Québec, Université Laval >> Ph. D. en physique >> >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > > > -- > --------------------------------- > Maxime Boissonneault > Analyste de calcul - Calcul Québec, Université Laval > Ph. D. en physique > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
