Le 2013-10-30 17:50, Matthew Knepley a écrit :
On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault
<[email protected]
<mailto:[email protected]>> wrote:
Le 2013-10-30 17:45, Matthew Knepley a écrit :
On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault
<[email protected]
<mailto:[email protected]>> wrote:
Hi,
Here is the attached configure.log file.
I will try the flag --with-debugging tomorrow.
Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2
-xHost -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
I had -O3 earlier. The error was the same. It is overwritten by
the makefile anyway if you look in the details. This is not the
source of the problem.
I know, but if you leave it there with you use --with-debugging, it
could still cause the problem.
--with-dynamic-loading
--with-x=0 --with-mpi-compilers=1
--with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
--known-mpi-shared-libraries=1
--with-debugging=no
--with-shared-libraries=1
--with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
Don't need this --with-scalapack=1
--with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
--with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
Don't need this --with-blacs=1
--with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
--with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
--download-mumps=yes
--download-ptscotch=1
--download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes
--download-metis=yes
--download-ml=yes
This is deprecated. Use -pc_type gamg --download-prometheus=yes
Which part is, download-ml ? or download-hypre ? Again, this is
not the module that fails compiling however.
I do not understand the question here. ML is algebraic multigrid,
similar to -pc_type gamg. Hypre has a few things in it.
Some context : I am a system administrator installing this library using
the package list given to me by the user who will use it. I do not know
the details of what each package does.
I do not understand which part is depecrated and what I should replace
with -pc_type gamg.
Matt
Maxime
--download-hypre=yes
Matt
Maxime
Le 2013-10-30 16:49, Matthew Knepley a écrit :
On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault
<[email protected]
<mailto:[email protected]>> wrote:
Hi,
I am currently trying to compile PETSc 3.4.3 with ICC
14.0 and OpenMPI 1.6.5 and it fails SuperLU_Dist.
I am getting the following error :
68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
-I/software6/mpi/openmpi/1.6.5_intel/include
-I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost
-mkl -fPIC -m64 -fPIC -O3 -DAdd_ -DUSE_VENDOR_BLAS -c
pdgstrf.c
68304 make[1]: Leaving directory
`/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
68305 error #13002: unexpected CFE message argument: e.
The staggered cosine transform may be
68306 warning #13003: message verification failed for:
556; reverting to internal message
68307 pdgstrf.c(2672): warning #556: a value of type
"int" cannot be assigned to an entity of type "MPI_Request"
68308 U_diag_blk_send_req[krow] = 1; /* flag outstanding
Isend */
68309 ^
68310
68311 pdgstrf.c(2672): warning #152: Fatal error:
Trigonometric Transform has failed to release the memory.
68312 U_diag_blk_send_req[krow] = 1; /* flag outstanding
Isend */
68313 ^
68314
68315 compilation aborted for pdgstrf.c (code 1)
68316 make[1]: *** [pdgstrf.o] Error 1
Anyone has a clue on to what might be going on ?
1) Always send configure.log
2) It looks like an Intel compiler bug. Try building with
--with-debugging first
Matt
--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique
--
What most experimenters take for granted before they begin
their experiments is infinitely more interesting than any
results to which their experiments lead.
-- Norbert Wiener
--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to
which their experiments lead.
-- Norbert Wiener
--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which
their experiments lead.
-- Norbert Wiener
--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique
