Hi Hernán, Can you send me privately some data that I can try? If you want to do some modeling, I would suggest to use Moose and use Roassal for the visualization. We can do a pair programming session on this if you wish. My Skype id is alexandre.bergel
Cheers, Alexandre On Dec 26, 2013, at 9:48 PM, Hernán Morales Durand <[email protected]> wrote: > Hi Tudor, > Thanks for the clarification. > Can you comment or point a link for the mechanism to transform my data for > Roassal? Because if you want to visualize big data like population or > association studies input is sometimes millions of rows. Of course I am not > asking you to write my parsers :) > > Cheers, > > Hernán > > > > > 2013/12/26 Tudor Girba <[email protected]> > Hi Hernán, > > The input should be independent from the visualization engine. Roassal offers > you a way of transforming your objects into a visualization and it should not > be responsible for the input formats. > > Cheers, > Doru > > > On Thu, Dec 26, 2013 at 9:28 PM, Hernán Morales Durand > <[email protected]> wrote: > Hi Alexandre and Ricardo, > > I am glad to see your advances in Roassal visualization! > I wonder which input formats do you plan to support? > > Your relation tower can be used to visualize the crossover percentages > between haplotype blocks. For example, here are some Haplotypes drawings from > Haploview (http://en.wikipedia.org/wiki/Haploview) which may interest you: > > http://www.jnsbm.org/viewimage.asp?img=JNatScBiolMed_2012_3_2_139_101887_f13.jpg > from this paper > http://www.jnsbm.org/temp/JNatScBiolMed32139-5367486_145434.pdf > > http://www.mailund.dk/wp-content/uploads/2010/04/haplotypes.png > http://www.mailund.dk/wp-content/uploads/2010/04/journal.pone_.0010207.g005.png > > I can send you the exported haplotypes from a study if you are interested. It > contains 131 blocks which is somewhat big to attach to this list. The only > problem I see is that a parser is needed to parse the Haplotype text output > file, although the format should not be difficult to parse. > > Cheers, > > Hernán > > > > > > > > 2013/12/17 Alexandre Bergel <[email protected]> > Hi! > > A new builder for Roassal is coming… The goal of Relation tower is to easily > visualize relations between group of elements. We had the inspiration from > the following website http://peoplemov.in/#! > > Here are some screenshots: > https://www.facebook.com/media/set/?set=a.559114290841839.1073741837.340543479365589&type=3 > > If you like these screenshots, then you know where the like button is :-) > > We will have this visualization on the web, thanks to our smooth and nice > Pharo2Amber migration process. > > Any idea on how to extend/apply Relation tower? Any set of data you want us > to play with? Your data? > Feedback are very welcome! > > Cheers, > Ricardo & Alexandre > > -- > _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;: > Alexandre Bergel http://www.bergel.eu > ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;. > > > > > > > -- > www.tudorgirba.com > > "Every thing has its own flow" > -- _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;: Alexandre Bergel http://www.bergel.eu ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;.
