I think the OP is having both PHP & JS codes mixed and scattered all
over the page.  If chunked-encoding used without any ob*
implementation, then that's the problem he'll experience.


I recommend to put the $(document).ready() and any JS scriptlets
within <body></body> tags at the very bottom of the HTML document just
right before </body>.  This would allow the mixed PHP/HTML to finish
without creating problems for your JS code(s).  The other solution is
implement output buffer using ob* functions.


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