Your message dated Thu, 30 Jul 2015 22:20:24 +0200 with message-id <55ba8708.9010...@xs4all.nl> and subject line Re: Bug#793891: nco: FTBFS with netcdf in experimental has caused the Debian Bug report #793891, regarding nco: FTBFS with netcdf in experimental to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 793891: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=793891 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: nco Version: 4.5.1-1 Severity: normal Tags: upstream User: debian-...@lists.debian.org Usertags: netcdf-split-c-f-cxx Dear Maintainer, nco (4.5.1-1) fails to build with the new netcdf packages in experimental: libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. \ -I/usr/include -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 \ -fstack-protector-strong -Wformat -Werror=format-security -std=c99 \ -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC \ -o .libs/nco_bnr.o In file included from /usr/include/string.h:635:0, from nco_att_utl.h:22, from nco_att_utl.c:10: nco_sng_utl.h:79:3: error: expected identifier or '(' before '__extension__' strdup /* [fnc] Duplicate string */ ^ In file included from /usr/include/string.h:635:0, from nco_netcdf.h:46, from nco_aux.h:22, from nco_aux.c:19: nco_sng_utl.h:79:3: error: expected identifier or '(' before '__extension__' strdup /* [fnc] Duplicate string */ ^ The full build log is attached. The build succeeds with netcdf (1:4.1.3-7.2), but fails with netcdf (1:4.4.0~rc2-1~exp2). This issue needs to be resolved to not hinder the upcoming netcdf transition. Kind Regards, Bas
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--- Begin Message ---notfound 793891 nco/4.5.1-1 thanks Hi Charlie, On 29-07-15 22:49, Sebastiaan Couwenberg wrote: > On 29-07-15 22:39, Charlie Zender wrote: >> Any hints here would be appreciated... >> NCO builds fine on many different machines. >> It appears to me that new Debian netCDF package seems >> to cause NCO's configure test for strdup() to fail, >> so NCO uses its own internal prototype for strdup() >> instead, and then this prototype runs into a conflict >> with the strdup() prototype in "string.h". >> Not sure why the new netCDF package would alter previous behavior. > > The biggest changes in the new netcdf library is that it's built with > the HDF5 MPI variants (openmpi on most architectures). It may be that an > MPI optimized strdup() is used now? The nco (4.5.1-1) build failures was fixed with the new netcdf (1:4.4.0~rc2-1~exp4) in which nc-config & netcdf.pc are patched to include the HDF5 library & include paths. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1
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