Hi all
First and foremost thanks and praises to Ingo for all the hard work
patching R and the guts for trying to push patches upstream (people who
complain about Theo's manners clearly never had to deal with Brian
Ripley).
On Tue, Apr 21, 2015 at 06:13:15PM +0200, Ingo Feinerer wrote:
> On Tue, Apr 21, 2015 at 08:12:56AM +0200, Rafael Sadowski wrote:
> > > - Add devel/libidn and net/curl in LIB_DEPENDS
> > > (based on "make port-lib-depends-check")
> > > and adapt WANTLIB accordingly
> >
> > okay for curl, but it's not set as default option true.
>
> As far as I see there is no explicit configure option to enable/disable
> it. If curl is there, it picks it up. So I added it to WANTLIB and
> LIB_DEPENDS.
I don't think curl is a strict dependency, at least not at runtime. R
"Installation and administration manual" states that
"libcurl version 7.28.0 or later can be used to support curlGetHeaders
and the "libcurl" methods of download.file and url."
but the help page for download.file says
For methods ‘"wget"’, ‘"curl"’ and ‘"lynx"’ a system call is made
to the tool given by ‘method’, and the respective program must be
installed on your system and be in the search path for executables.
They will block all other activity on the R process until they
complete: this may make a GUI unresponsive.
and
Method ‘"wget"’ is mainly for historical compatibility, but it and
‘"curl"’ can be used for URLs (e.g., ‘https://’ URLs or those that use
cookies) which the internal method does not support.
So I'm guessing its something R likes to have around for the
aforementioned methods of download.file and url, but not exactly
essential...
> idn is needed by
>
> R-3.2.0(math/R):
> Missing: idn.17 from libidn-1.30 (/usr/local/lib/R/modules/internet.so)
> WANTLIB += idn
>
> so I added it as well.
>
> > > - Avoid setting ac_cv_path_TAR as it works without
> >
> > Are your sure, R pick up gtar?
>
> I am pretty confident. The configure script checks for "${TAR} gtar
> gnutar tar" in that order. Since we do not set $TAR, gtar is found (as
> we have it in BUILD_DEPENDS) and used.
>
> > > Remarks:
> > >
> > > - I have
> > >
> > > LDFLAGS=-L/usr/local/lib
> > > CFLAGS=-I/usr/local/include
> > >
> > > in my .R/Makevars. This is very useful if you install packages which
> > > need to compile some C code at installation. Should this info be
> > > included in pkg/README?
> >
> > I think it's a good advice.
>
> I added a corresponding statement to pkg/README (based on
> http://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Customizing-package-compilation)
>
> > > - Moreover, I am willing to take MAINTAINERship just in case Rafael
> > > Sadowski is no longer interested. I plan to provide updates in the
> > > future as well as I need a current R version for my work/research.
> > >
> >
> > I'm interested but I think you're the better men for this port. You're
> > closer to the R community and (more or less) a daily R user on OpenBSD.
> > I will not stand in the way.
>
> Thanks. On your approval I changed the MAINTAINER line as well. Future
> updates will be posted to ports@ anyway, so you will be kept up-to-date
> if something relevant happens.
>
> Now to Vadim's comments:
>
> > I see SHARED_LIBS minor bumped twice: 3.0 => 3.2. This should be 3.1
> > instead.
>
> Fixed. (The idea was to resemble that the R version is 3.2.)
>
> > Given that there were problems in that area previously (PIC related),
> > I think this update worths trying on i386 before going in. If noone
> > could do that, I'll try do in the next few days.
> >
> > If build will go smoothly, I'll commit the update (with SHARED_LIBS
> > tweak mentioned above).
>
> That would be great!
>
> Best regards,
> Ingo
>
> Index: Makefile
> ===================================================================
> RCS file: /cvs/ports/math/R/Makefile,v
> retrieving revision 1.68
> diff -u -p -u -p -r1.68 Makefile
> --- Makefile 13 Apr 2015 10:41:13 -0000 1.68
> +++ Makefile 21 Apr 2015 15:55:29 -0000
> @@ -3,42 +3,38 @@
> SHARED_ONLY= Yes
>
> COMMENT= powerful math/statistics/graphics language
> -DISTNAME= R-3.1.3
> -REVISION= 1
> +DISTNAME= R-3.2.0
>
> -SHARED_LIBS= R 3.0
> +SHARED_LIBS= R 3.1
> SHARED_LIBS+= Rlapack 31.2 # 31.2
> SHARED_LIBS+= Rblas 31.2 # 31.2
>
> CATEGORIES= math
> HOMEPAGE= http://www.r-project.org/
>
> -MAINTAINER= Rafael Sadowski <[email protected]>
> +MAINTAINER= Ingo Feinerer <[email protected]>
>
> # GPL
> PERMIT_PACKAGE_CDROM= Yes
>
> -WANTLIB= ICE SM X11 Xext Xmu Xss Xt bz2 c cairo \
> - ereadline fontconfig freetype glib-2.0 \
> - gobject-2.0 icui18n icuuc jpeg lzma m \
> +WANTLIB= ICE SM X11 Xext Xmu Xss Xt bz2 c crypto curl \
> + cairo ereadline fontconfig freetype glib-2.0 \
> + gobject-2.0 icui18n icuuc idn jpeg lzma m \
> ncurses pango-1.0 pangocairo-1.0 \
> - pangoft2-1.0 pcre png pthread tiff z \
> + pangoft2-1.0 pcre png pthread ssl tiff z \
> ${MODFORTRAN_WANTLIB} ${MODTK_WANTLIB}
>
> MASTER_SITES= http://cran.r-project.org/src/base/R-3/ \
> ftp://cran.r-project.org/pub/R/src/base/R-3/ \
> ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/R-3/ \
> http://cran.at.r-project.org/src/base/R-3/ \
> - http://cran.au.r-project.org/src/base/R-3/ \
> http://cran.br.r-project.org/src/base/R-3/ \
> http://cran.ch.r-project.org/src/base/R-3/ \
> http://cran.dk.r-project.org/src/base/R-3/ \
> http://cran.es.r-project.org/src/base/R-3/ \
> - http://cran.hu.r-project.org/src/base/R-3/ \
> http://cran.stat.ucla.edu/src/base/R-3/ \
> http://cran.uk.r-project.org/src/base/R-3/ \
> http://cran.us.r-project.org/src/base/R-3/ \
> - http://cran.za.r-project.org/src/base/R-3/ \
> http://lib.stat.cmu.edu/R/CRAN/src/base/R-3/ \
> http://probability.ca/cran/src/base/R-3/
>
> @@ -59,12 +55,14 @@ LIB_DEPENDS= ${MODFORTRAN_LIB_DEPENDS} \
> archivers/bzip2 \
> archivers/xz \
> devel/glib2 \
> + devel/libidn \
> devel/pango \
> devel/readline \
> graphics/cairo \
> graphics/jpeg \
> graphics/png \
> graphics/tiff \
> + net/curl \
> textproc/icu4c
>
> RUN_DEPENDS= archivers/gtar \
> @@ -82,17 +80,7 @@ CONFIGURE_ARGS= ${CONFIGURE_SHARED} \
> --enable-BLAS-shlib \
> --enable-R-shlib \
> --enable-prebuilt-html \
> - --with-ICU \
> - --with-cairo \
> - --with-jpeglib \
> - --with-libpng \
> - --with-libtiff \
> - --with-readline \
> - --with-system-bzlib \
> - --with-system-pcre \
> - --with-system-xz \
> --with-tcl-config=${MODTCL_CONFIG} \
> - --with-tcltk \
> --with-tk-config=${MODTK_CONFIG}
>
> CONFIGURE_ENV= FFLAGS="${FFLAGS}" \
> @@ -100,21 +88,11 @@ CONFIGURE_ENV= FFLAGS="${FFLAGS}" \
> LDFLAGS="-L${LOCALBASE}/lib -Wl,-R${LOCALBASE}/lib/R/lib" \
> LIBnn=lib \
> ac_cv_path_PDFLATEX="" \
> - ac_cv_path_TAR="${LOCALBASE}/bin/gtar" \
> rdocdir="${PREFIX}/share/doc/R"
>
> -MAKE_FLAGS= INSTALL_DATA='install -c -m 644' \
> - INSTALL_PROGRAM='install -c -s -m 555' \
> - INSTALL_SCRIPT='install -c -m 555' \
> - DYLIB_EXT=".so.${LIBR_VERSION}" \
> +MAKE_FLAGS= DYLIB_EXT=".so.${LIBR_VERSION}" \
> Rblas_la="libRblas.so.${LIBRblas_VERSION}" \
> Rlapack_la="libRlapack.so.$(LIBRlapack_VERSION)"
> -
> -FAKE_FLAGS= PREFIX=${PREFIX} \
> - INSTALL="${INSTALL_DATA}" \
> - INSTALL_DATA="${INSTALL_DATA}" \
> - INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
> - INSTALL_SCRIPT="${INSTALL_SCRIPT}"
>
> SEPARATE_BUILD= Yes
>
> Index: distinfo
> ===================================================================
> RCS file: /cvs/ports/math/R/distinfo,v
> retrieving revision 1.23
> diff -u -p -u -p -r1.23 distinfo
> --- distinfo 12 Apr 2015 18:29:11 -0000 1.23
> +++ distinfo 21 Apr 2015 15:55:29 -0000
> @@ -1,2 +1,2 @@
> -SHA256 (R-3.1.3.tar.gz) = B+mDI5NbqjgHkgS/uUFKApcEu5wMpasxcCCuUho3cxI=
> -SIZE (R-3.1.3.tar.gz) = 28942883
> +SHA256 (R-3.2.0.tar.gz) = 9a6VPxi6bz1VtGVWu79zRBNQ+f0iYlQCtyOiuB/2TzU=
> +SIZE (R-3.2.0.tar.gz) = 29124927
> Index: patches/patch-src_main_Rstrptime_h
> ===================================================================
> RCS file: patches/patch-src_main_Rstrptime_h
> diff -N patches/patch-src_main_Rstrptime_h
> --- patches/patch-src_main_Rstrptime_h 2 Sep 2014 14:55:37 -0000
> 1.1
> +++ /dev/null 1 Jan 1970 00:00:00 -0000
> @@ -1,160 +0,0 @@
> -$OpenBSD: patch-src_main_Rstrptime_h,v 1.1 2014/09/02 14:55:37 dcoppa Exp $
> -
> -Fix stability/security issues.
> -
> ---- src/main/Rstrptime.h.orig Mon Jul 14 21:49:54 2014
> -+++ src/main/Rstrptime.h Mon Jul 14 22:07:08 2014
> -@@ -42,6 +42,11 @@ static int locale_w_strings_set = 0;
> - static void get_locale_strings(void);
> - static void get_locale_w_strings(void);
> -
> -+#define WEEKDAY_SIZE 50
> -+#define AB_WEEKDAY_SIZE 10
> -+#define MONTH_SIZE 50
> -+#define AB_MONTH_SIZE 10
> -+#define AM_PM_SIZE 10
> -
> - #ifdef HAVE_STRINGS_H
> - #include <strings.h> /* for strncasecmp */
> -@@ -93,27 +98,27 @@ static void get_locale_w_strings(void);
> - * hence the extra length of the fields.
> - * Some OSes (e.g. glibc) have longer than 3-char abbreviations.
> - */
> --static char weekday_name[][50] =
> -+static char weekday_name[][WEEKDAY_SIZE] =
> - {
> - "Sunday", "Monday", "Tuesday", "Wednesday",
> - "Thursday", "Friday", "Saturday"
> - };
> --static char ab_weekday_name[][10] =
> -+static char ab_weekday_name[][AB_WEEKDAY_SIZE] =
> - {
> - "Sun", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat"
> - };
> --static char month_name[][50] =
> -+static char month_name[][MONTH_SIZE] =
> - {
> - "January", "February", "March", "April", "May", "June",
> - "July", "August", "September", "October", "November", "December"
> - };
> --static char ab_month_name[][10] =
> -+static char ab_month_name[][AB_MONTH_SIZE] =
> - {
> - "Jan", "Feb", "Mar", "Apr", "May", "Jun",
> - "Jul", "Aug", "Sep", "Oct", "Nov", "Dec"
> - };
> -
> --static char am_pm[][10] = {"AM", "PM"};
> -+static char am_pm[][AM_PM_SIZE] = {"AM", "PM"};
> -
> -
> - # define HERE_D_T_FMT "%a %b %e %H:%M:%S %Y"
> -@@ -174,27 +179,27 @@ day_of_the_year (stm *tm)
> - #include <wchar.h>
> - #include <wctype.h>
> -
> --static wchar_t w_weekday_name[][50] =
> -+static wchar_t w_weekday_name[][WEEKDAY_SIZE] =
> - {
> - L"Sunday", L"Monday", L"Tuesday", L"Wednesday",
> - L"Thursday", L"Friday", L"Saturday"
> - };
> --static wchar_t w_ab_weekday_name[][10] =
> -+static wchar_t w_ab_weekday_name[][AB_WEEKDAY_SIZE] =
> - {
> - L"Sun", L"Mon", L"Tue", L"Wed", L"Thu", L"Fri", L"Sat"
> - };
> --static wchar_t w_month_name[][50] =
> -+static wchar_t w_month_name[][MONTH_SIZE] =
> - {
> - L"January", L"February", L"March", L"April", L"May", L"June",
> - L"July", L"August", L"September", L"October", L"November", L"December"
> - };
> --static wchar_t w_ab_month_name[][10] =
> -+static wchar_t w_ab_month_name[][AB_MONTH_SIZE] =
> - {
> - L"Jan", L"Feb", L"Mar", L"Apr", L"May", L"Jun",
> - L"Jul", L"Aug", L"Sep", L"Oct", L"Nov", L"Dec"
> - };
> -
> --static wchar_t w_am_pm[][10] = {L"AM", L"PM"};
> -+static wchar_t w_am_pm[][AM_PM_SIZE] = {L"AM", L"PM"};
> -
> - /* Need case-insensitive version */
> - static int Rwcsncasecmp(const wchar_t *cs1, const wchar_t *s2)
> -@@ -1168,30 +1173,30 @@ static void get_locale_strings(void)
> - {
> - int i;
> - struct tm tm;
> -- char buff[4];
> -+ char buff[AM_PM_SIZE];
> -
> - tm.tm_sec = tm.tm_min = tm.tm_hour = tm.tm_mday = tm.tm_mon
> - = tm.tm_isdst = 0;
> - tm.tm_year = 30;
> - for(i = 0; i < 12; i++) {
> - tm.tm_mon = i;
> -- strftime(ab_month_name[i], 10, "%b", &tm);
> -- strftime(month_name[i], 50, "%B", &tm);
> -+ strftime(ab_month_name[i], AB_MONTH_SIZE, "%b", &tm);
> -+ strftime(month_name[i], MONTH_SIZE, "%B", &tm);
> - }
> - tm.tm_mon = 0;
> - for(i = 0; i < 7; i++) {
> - tm.tm_mday = tm.tm_yday = i+1; /* 2000-1-2 was a Sunday */
> - tm.tm_wday = i;
> -- strftime(ab_weekday_name[i], 10, "%a", &tm);
> -- strftime(weekday_name[i], 50, "%A", &tm);
> -+ strftime(ab_weekday_name[i], AB_WEEKDAY_SIZE, "%a", &tm);
> -+ strftime(weekday_name[i], WEEKDAY_SIZE, "%A", &tm);
> - }
> - tm.tm_hour = 1;
> - /* in locales where these are unused, they may be empty:
> - better not to reset them then */
> -- strftime(buff, 10, "%p", &tm);
> -+ strftime(buff, AM_PM_SIZE, "%p", &tm);
> - if(strlen(buff)) strcpy(am_pm[0], buff);
> - tm.tm_hour = 13;
> -- strftime(buff, 10, "%p", &tm);
> -+ strftime(buff, AM_PM_SIZE, "%p", &tm);
> - if(strlen(buff)) strcpy(am_pm[1], buff);
> - locale_strings_set = 1;
> - }
> -@@ -1201,30 +1206,30 @@ static void get_locale_w_strings(void)
> - {
> - int i;
> - struct tm tm;
> -- wchar_t buff[4];
> -+ wchar_t buff[AM_PM_SIZE];
> -
> - tm.tm_sec = tm.tm_min = tm.tm_hour = tm.tm_mday = tm.tm_mon
> - = tm.tm_isdst = 0;
> - tm.tm_year = 30;
> - for(i = 0; i < 12; i++) {
> - tm.tm_mon = i;
> -- wcsftime(w_ab_month_name[i], 10, L"%b", &tm);
> -- wcsftime(w_month_name[i], 50, L"%B", &tm);
> -+ wcsftime(w_ab_month_name[i], AB_MONTH_SIZE, L"%b", &tm);
> -+ wcsftime(w_month_name[i], MONTH_SIZE, L"%B", &tm);
> - }
> - tm.tm_mon = 0;
> - for(i = 0; i < 7; i++) {
> - tm.tm_mday = tm.tm_yday = i+1; /* 2000-1-2 was a Sunday */
> - tm.tm_wday = i;
> -- wcsftime(w_ab_weekday_name[i], 10, L"%a", &tm);
> -- wcsftime(w_weekday_name[i], 50, L"%A", &tm);
> -+ wcsftime(w_ab_weekday_name[i], AB_WEEKDAY_SIZE, L"%a", &tm);
> -+ wcsftime(w_weekday_name[i], WEEKDAY_SIZE, L"%A", &tm);
> - }
> - tm.tm_hour = 1;
> - /* in locales where these are unused, they may be empty:
> - better not to reset them then */
> -- wcsftime(buff, 10, L"%p", &tm);
> -+ wcsftime(buff, AM_PM_SIZE, L"%p", &tm);
> - if(wcslen(buff)) wcscpy(w_am_pm[0], buff);
> - tm.tm_hour = 13;
> -- wcsftime(buff, 10, L"%p", &tm);
> -+ wcsftime(buff, AM_PM_SIZE, L"%p", &tm);
> - if(wcslen(buff)) wcscpy(w_am_pm[1], buff);
> - locale_w_strings_set = 1;
> - }
> Index: pkg/PLIST
> ===================================================================
> RCS file: /cvs/ports/math/R/pkg/PLIST,v
> retrieving revision 1.25
> diff -u -p -u -p -r1.25 PLIST
> --- pkg/PLIST 12 Apr 2015 18:29:11 -0000 1.25
> +++ pkg/PLIST 21 Apr 2015 15:55:30 -0000
> @@ -370,6 +370,7 @@ lib/R/library/Matrix/Meta/nsInfo.rds
> lib/R/library/Matrix/Meta/package.rds
> lib/R/library/Matrix/Meta/vignette.rds
> lib/R/library/Matrix/NAMESPACE
> +lib/R/library/Matrix/NEWS.Rd
> lib/R/library/Matrix/R/
> lib/R/library/Matrix/R/Matrix
> lib/R/library/Matrix/R/Matrix.rdb
> @@ -454,6 +455,7 @@ lib/R/library/Matrix/html/atomicVector-c
> lib/R/library/Matrix/html/band.html
> lib/R/library/Matrix/html/bandSparse.html
> lib/R/library/Matrix/html/bdiag.html
> +lib/R/library/Matrix/html/boolean-matprod.html
> lib/R/library/Matrix/html/cBind.html
> lib/R/library/Matrix/html/chol.html
> lib/R/library/Matrix/html/chol2inv-methods.html
> @@ -536,6 +538,7 @@ lib/R/library/Matrix/html/sparseVector.h
> lib/R/library/Matrix/html/symmetricMatrix-class.html
> lib/R/library/Matrix/html/symmpart.html
> lib/R/library/Matrix/html/triangularMatrix-class.html
> +lib/R/library/Matrix/html/uniqTsparse.html
> lib/R/library/Matrix/html/unpack.html
> lib/R/library/Matrix/html/unused-classes.html
> lib/R/library/Matrix/html/updown.html
> @@ -558,6 +561,9 @@ lib/R/library/Matrix/po/fr/
> lib/R/library/Matrix/po/fr/LC_MESSAGES/
> lib/R/library/Matrix/po/fr/LC_MESSAGES/Matrix.mo
> lib/R/library/Matrix/po/fr/LC_MESSAGES/R-Matrix.mo
> +lib/R/library/Matrix/po/ko/
> +lib/R/library/Matrix/po/ko/LC_MESSAGES/
> +lib/R/library/Matrix/po/ko/LC_MESSAGES/R-Matrix.mo
> lib/R/library/Matrix/po/pl/
> lib/R/library/Matrix/po/pl/LC_MESSAGES/
> lib/R/library/Matrix/po/pl/LC_MESSAGES/Matrix.mo
> @@ -724,6 +730,8 @@ lib/R/library/base/html/contributors.htm
> lib/R/library/base/html/copyright.html
> lib/R/library/base/html/crossprod.html
> lib/R/library/base/html/cumsum.html
> +lib/R/library/base/html/curlGetHeaders.html
> +lib/R/library/base/html/curlVersion.html
> lib/R/library/base/html/cut.POSIXt.html
> lib/R/library/base/html/cut.html
> lib/R/library/base/html/data.class.html
> @@ -761,6 +769,7 @@ lib/R/library/base/html/eval.html
> lib/R/library/base/html/exists.html
> lib/R/library/base/html/expand.grid.html
> lib/R/library/base/html/expression.html
> +lib/R/library/base/html/extSoftVersion.html
> lib/R/library/base/html/factor.html
> lib/R/library/base/html/file.access.html
> lib/R/library/base/html/file.choose.html
> @@ -772,6 +781,7 @@ lib/R/library/base/html/files2.html
> lib/R/library/base/html/find.package.html
> lib/R/library/base/html/findInterval.html
> lib/R/library/base/html/force.html
> +lib/R/library/base/html/forceAndCall.html
> lib/R/library/base/html/formals.html
> lib/R/library/base/html/format.html
> lib/R/library/base/html/format.info.html
> @@ -823,6 +833,7 @@ lib/R/library/base/html/labels.html
> lib/R/library/base/html/lapply.html
> lib/R/library/base/html/lazyload.html
> lib/R/library/base/html/length.html
> +lib/R/library/base/html/lengths.html
> lib/R/library/base/html/levels.html
> lib/R/library/base/html/libPaths.html
> lib/R/library/base/html/library.dynam.html
> @@ -987,6 +998,7 @@ lib/R/library/base/html/trace.html
> lib/R/library/base/html/traceback.html
> lib/R/library/base/html/tracemem.html
> lib/R/library/base/html/transform.html
> +lib/R/library/base/html/trimws.html
> lib/R/library/base/html/try.html
> lib/R/library/base/html/typeof.html
> lib/R/library/base/html/unique.html
> @@ -1702,6 +1714,7 @@ lib/R/library/grDevices/html/embedFonts.
> lib/R/library/grDevices/html/extendrange.html
> lib/R/library/grDevices/html/getGraphicsEvent.html
> lib/R/library/grDevices/html/grDevices-package.html
> +lib/R/library/grDevices/html/grSoftVersion.html
> lib/R/library/grDevices/html/gray.colors.html
> lib/R/library/grDevices/html/gray.html
> lib/R/library/grDevices/html/hcl.html
> @@ -1825,6 +1838,7 @@ lib/R/library/graphics/html/plot.design.
> lib/R/library/graphics/html/plot.factor.html
> lib/R/library/graphics/html/plot.formula.html
> lib/R/library/graphics/html/plot.html
> +lib/R/library/graphics/html/plot.raster.html
> lib/R/library/graphics/html/plot.table.html
> lib/R/library/graphics/html/plot.window.html
> lib/R/library/graphics/html/plot.xy.html
> @@ -2310,8 +2324,10 @@ lib/R/library/mgcv/html/rTweedie.html
> lib/R/library/mgcv/html/random.effects.html
> lib/R/library/mgcv/html/residuals.gam.html
> lib/R/library/mgcv/html/rig.html
> +lib/R/library/mgcv/html/rmvn.html
> lib/R/library/mgcv/html/s.html
> lib/R/library/mgcv/html/scat.html
> +lib/R/library/mgcv/html/single.index.html
> lib/R/library/mgcv/html/slanczos.html
> lib/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html
> lib/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html
> @@ -2342,6 +2358,31 @@ lib/R/library/mgcv/html/ziP.html
> lib/R/library/mgcv/html/ziplss.html
> lib/R/library/mgcv/libs/
> lib/R/library/mgcv/libs/mgcv.so
> +lib/R/library/mgcv/po/
> +lib/R/library/mgcv/po/de/
> +lib/R/library/mgcv/po/de/LC_MESSAGES/
> +lib/R/library/mgcv/po/de/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/de/LC_MESSAGES/mgcv.mo
> +lib/R/library/mgcv/po/en@quot/
> +lib/R/library/mgcv/po/en@quot/LC_MESSAGES/
> +lib/R/library/mgcv/po/en@quot/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/en@quot/LC_MESSAGES/mgcv.mo
> +lib/R/library/mgcv/po/fr/
> +lib/R/library/mgcv/po/fr/LC_MESSAGES/
> +lib/R/library/mgcv/po/fr/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/fr/LC_MESSAGES/mgcv.mo
> +lib/R/library/mgcv/po/ko/
> +lib/R/library/mgcv/po/ko/LC_MESSAGES/
> +lib/R/library/mgcv/po/ko/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/ko/LC_MESSAGES/mgcv.mo
> +lib/R/library/mgcv/po/pl/
> +lib/R/library/mgcv/po/pl/LC_MESSAGES/
> +lib/R/library/mgcv/po/pl/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/pl/LC_MESSAGES/mgcv.mo
> +lib/R/library/mgcv/po/po/
> +lib/R/library/mgcv/po/po/LC_MESSAGES/
> +lib/R/library/mgcv/po/po/LC_MESSAGES/R-mgcv.mo
> +lib/R/library/mgcv/po/po/LC_MESSAGES/mgcv.mo
> lib/R/library/nlme/
> lib/R/library/nlme/CITATION
> lib/R/library/nlme/DESCRIPTION
> @@ -3591,6 +3632,8 @@ lib/R/library/tools/Meta/nsInfo.rds
> lib/R/library/tools/Meta/package.rds
> lib/R/library/tools/NAMESPACE
> lib/R/library/tools/R/
> +lib/R/library/tools/R/sysdata.rdb
> +lib/R/library/tools/R/sysdata.rdx
> lib/R/library/tools/R/tools
> lib/R/library/tools/R/tools.rdb
> lib/R/library/tools/R/tools.rdx
> @@ -3637,6 +3680,7 @@ lib/R/library/tools/html/find_gs_cmd.htm
> lib/R/library/tools/html/getDepList.html
> lib/R/library/tools/html/getVignetteInfo.html
> lib/R/library/tools/html/installFoundDepends.html
> +lib/R/library/tools/html/loadRdMacros.html
> lib/R/library/tools/html/makeLazyLoading.html
> lib/R/library/tools/html/make_translations_pkg.html
> lib/R/library/tools/html/md5sum.html
> @@ -3654,6 +3698,7 @@ lib/R/library/tools/html/testInstalledPa
> lib/R/library/tools/html/texi2dvi.html
> lib/R/library/tools/html/toHTML.html
> lib/R/library/tools/html/toRd.html
> +lib/R/library/tools/html/toTitleCase.html
> lib/R/library/tools/html/tools-defunct.html
> lib/R/library/tools/html/tools-deprecated.html
> lib/R/library/tools/html/tools-package.html
> @@ -4082,6 +4127,7 @@ lib/R/library/utils/html/help.html
> lib/R/library/utils/html/help.request.html
> lib/R/library/utils/html/help.search.html
> lib/R/library/utils/html/help.start.html
> +lib/R/library/utils/html/hsearch-utils.html
> lib/R/library/utils/html/install.packages.html
> lib/R/library/utils/html/installed.packages.html
> lib/R/library/utils/html/localeToCharset.html
> @@ -4152,7 +4198,6 @@ lib/R/modules/R_X11.so
> lib/R/modules/R_de.so
> lib/R/modules/internet.so
> lib/R/modules/lapack.so
> -lib/R/modules/vfonts.so
> lib/R/share/
> lib/R/share/R/
> lib/R/share/R/REMOVE.R
> @@ -4160,6 +4205,9 @@ lib/R/share/R/examples-footer.R
> lib/R/share/R/examples-header.R
> lib/R/share/R/nspackloader.R
> lib/R/share/R/tests-startup.R
> +lib/R/share/Rd/
> +lib/R/share/Rd/macros/
> +lib/R/share/Rd/macros/system.Rd
> lib/R/share/dictionaries/
> lib/R/share/dictionaries/en_stats.rds
> lib/R/share/encodings/
> @@ -4229,13 +4277,6 @@ share/doc/R/html/resources.html
> share/doc/R/html/right.jpg
> share/doc/R/html/up.jpg
> share/doc/R/manual/
> -share/doc/R/manual/R-FAQ.html
> -share/doc/R/manual/R-admin.html
> -share/doc/R/manual/R-data.html
> -share/doc/R/manual/R-exts.html
> -share/doc/R/manual/R-intro.html
> -share/doc/R/manual/R-ints.html
> -share/doc/R/manual/R-lang.html
> share/doc/R/manual/images/
> share/doc/R/manual/images/QQ.png
> share/doc/R/manual/images/ecdf.png
> Index: pkg/README
> ===================================================================
> RCS file: /cvs/ports/math/R/pkg/README,v
> retrieving revision 1.1
> diff -u -p -u -p -r1.1 README
> --- pkg/README 8 Jan 2015 14:14:11 -0000 1.1
> +++ pkg/README 21 Apr 2015 15:55:30 -0000
> @@ -16,3 +16,11 @@ Running:
>
> as root, will update both ${TRUEPREFIX}/lib/R/etc/Makeconf and
> ${TRUEPREFIX}/lib/R/etc/ldpaths with the right settings.
> +
> +Customizing package compilation
> +===============================
> +Make variables to be used by R packages compiling code at installation time
> +can be customized via ~/.R/Makevars:
> +
> +CFLAGS=-I${LOCALBASE}/include
> +LDFLAGS=-L${LOCALBASE}/lib
>
--
