On Fri, Dec 21, 2018 at 01:23:28PM +0100, Ingo Feinerer wrote:
> Dear useRs,
>
> update math/R 3.5.1 -> 3.5.2
>
> - Bump SO_VERSION minor as check_sym
> (/usr/src/lib/check_sym libR.so.34.1 libR.so.34.2) reports:
>
> No dynamic export changes
> External reference changes:
> added:
> fstat
> pthread_equal
> pthread_kill
> pthread_self
>
> I am not sure it is strictly necessary here but it does not hurt.
>
> - Removed "curses fribidi" from WANTLIB as "make port-lib-depends-check"
> reports them as extra. There are still
>
> R-3.5.2(math/R):
> Extra: c++.2 c++abi.0
>
> but I think these should not be removed?
>
> - The `tan(1+1000i)` test still fails (see
> https://marc.info/?l=openbsd-tech&m=150737856618497&w=2).
>
> OK?
I do not have an opinion in regard to WANTLIB because I do not
understand how it works :)
Other than that, OK with me.
>
> Best regards,
> Ingo
>
> Index: Makefile
> ===================================================================
> RCS file: /cvs/ports/math/R/Makefile,v
> retrieving revision 1.104
> diff -u -p -r1.104 Makefile
> --- Makefile 14 Nov 2018 20:48:21 -0000 1.104
> +++ Makefile 21 Dec 2018 12:03:22 -0000
> @@ -1,10 +1,9 @@
> # $OpenBSD: Makefile,v 1.104 2018/11/14 20:48:21 sthen Exp $
>
> COMMENT= powerful math/statistics/graphics language
> -DISTNAME= R-3.5.1
> -REVISION= 2
> +DISTNAME= R-3.5.2
>
> -SO_VERSION= 34.1
> +SO_VERSION= 34.2
> .for _lib in R Rblas Rlapack
> SHARED_LIBS += ${_lib} ${SO_VERSION}
> .endfor
> @@ -18,7 +17,7 @@ MAINTAINER= Ingo Feinerer <feinerer@logi
> PERMIT_PACKAGE_CDROM= Yes
>
> WANTLIB += ${COMPILER_LIBCXX} ${MODTK_WANTLIB}
> -WANTLIB += ICE SM X11 Xext Xmu Xss Xt bz2 c cairo crypto curl curses fribidi
> +WANTLIB += ICE SM X11 Xext Xmu Xss Xt bz2 c cairo crypto curl
> WANTLIB += glib-2.0 gobject-2.0 iconv icui18n icuuc intl jpeg lzma m
> WANTLIB += nghttp2 pango-1.0 pangocairo-1.0 pcre pcre2-8 png readline ssl
> tiff z
>
> Index: distinfo
> ===================================================================
> RCS file: /cvs/ports/math/R/distinfo,v
> retrieving revision 1.40
> diff -u -p -r1.40 distinfo
> --- distinfo 3 Jul 2018 21:46:50 -0000 1.40
> +++ distinfo 21 Dec 2018 12:03:22 -0000
> @@ -1,2 +1,2 @@
> -SHA256 (R-3.5.1.tar.gz) = BGO/9e6g89k/oHH3nBjQmTh4/U8uGK5s8iwWOdEUV+0=
> -SIZE (R-3.5.1.tar.gz) = 29812849
> +SHA256 (R-3.5.2.tar.gz) = 5T2MPPIPK416nBYxtvaiKHRQb7OSA0dYs7s0HFhsW2I=
> +SIZE (R-3.5.2.tar.gz) = 30186438
> Index: patches/patch-configure
> ===================================================================
> RCS file: /cvs/ports/math/R/patches/patch-configure,v
> retrieving revision 1.35
> diff -u -p -r1.35 patch-configure
> --- patches/patch-configure 24 Apr 2018 17:13:38 -0000 1.35
> +++ patches/patch-configure 21 Dec 2018 12:03:22 -0000
> @@ -3,7 +3,7 @@ $OpenBSD: patch-configure,v 1.35 2018/04
> Index: configure
> --- configure.orig
> +++ configure
> -@@ -38967,8 +38967,8 @@ fi
> +@@ -39135,8 +39135,8 @@ fi
>
> fi
> if test "${have_zlib}" = yes; then
> @@ -14,7 +14,7 @@ Index: configure
> if ${r_cv_header_zlib_h+:} false; then :
> $as_echo_n "(cached) " >&6
> else
> -@@ -38983,7 +38983,7 @@ else
> +@@ -39151,7 +39151,7 @@ else
> #include <zlib.h>
> int main() {
> #ifdef ZLIB_VERNUM
> Index: pkg/PLIST
> ===================================================================
> RCS file: /cvs/ports/math/R/pkg/PLIST,v
> retrieving revision 1.40
> diff -u -p -r1.40 PLIST
> --- pkg/PLIST 4 Sep 2018 12:46:15 -0000 1.40
> +++ pkg/PLIST 21 Dec 2018 12:03:22 -0000
> @@ -1386,6 +1386,9 @@ lib/R/library/survival/doc/adjcurve.pdf
> lib/R/library/survival/doc/compete.R
> lib/R/library/survival/doc/compete.Rnw
> lib/R/library/survival/doc/compete.pdf
> +lib/R/library/survival/doc/concordance.R
> +lib/R/library/survival/doc/concordance.Rnw
> +lib/R/library/survival/doc/concordance.pdf
> lib/R/library/survival/doc/index.html
> lib/R/library/survival/doc/multi.R
> lib/R/library/survival/doc/multi.Rnw
