On Tue, Jun 02, 2009 at 08:44:30PM -0700, David Goodstein wrote: -> On Jun 2, 2009, at 6:05 PM, C. Titus Brown wrote: -> > On Tue, Jun 02, 2009 at 05:23:36PM -0700, dmgood11 wrote: -> > -> I was wondering if there had been any work on supporting fetches -> > from -> > -> BioMart or GBrowse/GFF databases (for those of us whose genomic -> > data -> > -> are not stored in Santa Cruz format)?
[ ... ] -> > I expect to write some wrappers to load in GFF3 later this summer. -> > I'll -> > post them here as I work on it. -> -> Thanks Titus. Since Gbrowse supports GFF3 dumps, your GFF3 wrappers -> will be one straightforward way to load in GBrowse data. That may -> allow our group to focus on pulling in data from BioMart. Not so oddly enough, we seem to have the same goal here... interacting with (and eliminating the need for, in my case) GBrowse! -> David M. Goodstein -> Computational Genomics and Plant Genomics Program -> Joint Genome Institute -> USDOE - Lawrence Berkeley National Lab -> http://www.phytozome.net What, you can't work with UCSC, who sits at most a 100 miles away from you? ;) cheers, --titus -- C. Titus Brown, c...@msu.edu --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
