On Jun 2, 2009, at 6:05 PM, C. Titus Brown wrote:
> > On Tue, Jun 02, 2009 at 05:23:36PM -0700, dmgood11 wrote: > -> I was wondering if there had been any work on supporting fetches > from > -> BioMart or GBrowse/GFF databases (for those of us whose genomic > data > -> are not stored in Santa Cruz format)? > > Hi David, > > none that I know of, although Jenny Qian worked on an ENSEMBL > interface > -- you can take a look at it here, > > http://pygr.googlecode.com/files/pyensembl-0.1.0.tar.gz > > although I think it is not yet mature. Jenny, any comments? > > I expect to write some wrappers to load in GFF3 later this summer. > I'll > post them here as I work on it. > > cheers, > --titus > -- > C. Titus Brown, c...@msu.edu > Thanks Titus. Since Gbrowse supports GFF3 dumps, your GFF3 wrappers will be one straightforward way to load in GBrowse data. That may allow our group to focus on pulling in data from BioMart. regards, -David David M. Goodstein Computational Genomics and Plant Genomics Program Joint Genome Institute USDOE - Lawrence Berkeley National Lab http://www.phytozome.net --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
