On Tue, Jun 02, 2009 at 05:23:36PM -0700, dmgood11 wrote:
-> I was wondering if there had been any work on supporting fetches from
-> BioMart or GBrowse/GFF databases (for those of us whose genomic data
-> are not stored in Santa Cruz format)?
Hi David,
none that I know of, although Jenny Qian worked on an ENSEMBL interface
-- you can take a look at it here,
http://pygr.googlecode.com/files/pyensembl-0.1.0.tar.gz
although I think it is not yet mature. Jenny, any comments?
I expect to write some wrappers to load in GFF3 later this summer. I'll
post them here as I work on it.
cheers,
--titus
--
C. Titus Brown, c...@msu.edu
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