I tried closing the mapping, and I did indeed check to see if the filter was affecting, but there is exactly one record in the database that doesn't have a clusterid.
I'll post the script now, and re-run in just a while. There are two files posted: The build script: http://kmdaily.pastebin.com/d77aecc96 A dependency of the build script for setting up the database connection: http://kmdaily.pastebin.com/d662d8363 Any questions about the latter should be directed to Paul Rigor (he's a member of this group too). On Jun 15, 10:47 am, Christopher Lee <l...@chem.ucla.edu> wrote: > Hi Kenny, > a few ideas for dissecting this problem: > > - you should close() the Mapping before creating another Mapping with > the same file name. As a general rule, you should always close() a > Mapping object after you're done with it. I doubt this is relevant to > the iterator problem, though. > > - could you also count the events outside the if event.clusterid > conditional? we should make sure that the problem isn't due to this > conditional somehow filtering out results that the iterator is > returning. > > - I think we should remove worldbase from the equation. I.e. can you > post a script that shows the construction of the events AnnotationDB > followed immediately by counting the results of iteration from its > itervalues() vs. values(), and also counting the results of iteration > from its sliceDB.iteritems() vs. sliceDB.items()? Also send us the > results you get with this new script. This would serve two purposes; > first, showing us the code that builds the AnnotationDB, and second > excluding worldbase from the problem. > > -- Chris --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
