Hi Kenny, if annotation_db.itervalues() and annotation_db.values() return different iteration counts, I'd strongly expect annotation_db.sliceDB.iteritems() and annotation_db.sliceDB.items() to also return different iteration counts. Could you check that, please? And please post the code that checks the counts immediately after creating the AnnotationDB (i.e. no worldbase), so we can see exactly how you're counting from the iterator.
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