Script (just modified to add the print statements from before):
http://kmdaily.pastebin.com/m7cefb266
My output:
annotation_db.itervalues = 247912
annotation_db.values = 247912
annotation_db.sliceDB.iteritems = 247912
annotation_db.sliceDB.items = 247912
So it's not that! When I comment out building the mapping.Mapping from
the iteration I'm doing, I get the correct counts using itervalues:
# use itervalues...doesn't iterate through all events!
n = 0
x = 0
for (n, event) in enumerate(events.itervalues()):
if event.clusterid:
x += 1
# cluster = clusters[event.clusterid + 1]
# es = M.get(cluster, [])
# es.append(event)
# M[cluster] = es
print "With itervalues, number of events seen: = %s, x = %s" %
(n,x)
M.close()
Output:
With itervalues, number of events seen: = 247911, x = 247910
On Jun 15, 5:29 pm, Christopher Lee <l...@chem.ucla.edu> wrote:
> Hi Kenny,
> if annotation_db.itervalues() and annotation_db.values() return
> different iteration counts, I'd strongly expect
> annotation_db.sliceDB.iteritems() and annotation_db.sliceDB.items() to
> also return different iteration counts. Could you check that,
> please? And please post the code that checks the counts immediately
> after creating the AnnotationDB (i.e. no worldbase), so we can see
> exactly how you're counting from the iterator.
>
> Thanks!
>
> Chris
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