On Mon, Jun 29, 2009 at 11:20:53AM +0900, Namshin Kim wrote:
-> No. I am building pairwise NLMSA from custom-made axtNet files. axtFiles are
-> not that big but there are 14m sequences in it. It would take 2-3 hours for
-> pygr to make .idDict and .seqIDdict.

ahh, I see.  is that how you'd recommend doing this sort of thing, then?
transforming the input first? seems kind of inelegant...

--t

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