> Could also be a mixture of DB types that's causing the error.  As you
> saw in my code, I download the mouse genome first, then the MSA.  As a
> result, the Mouse genome is a SequenceDB while the others are all
> BlastDB's.
>
> {'anoCar1': <BlastDB '/home/shared/pygrdata/genomes/anoCar1'>,
> ...
>  'loxAfr1': <BlastDB '/home/shared/pygrdata/genomes/loxAfr1'>,
>  'mm9': <SequenceFileDB '/home/shared/pygrdata/genomes/mm9'>,
>  'monDom4': <BlastDB '/home/shared/pygrdata/genomes/monDom4'>,
> ...
>  'tupBel1': <BlastDB '/home/shared/pygrdata/genomes/tupBel1'>,
>  'xenTro2': <BlastDB '/home/shared/pygrdata/genomes/xenTro2'>}
>
After deleting mm9 from worldbase and reissuing:
msa = worldbase('Bio.MSA.UCSC.mm9_multiz30way', download=True)

So that all the resources are now BlastDB's,
 'mm9': <BlastDB '/home/shared/pygrdata/genomes/mm9'>,
I'm still getting the same issue.

-- 
You received this message because you are subscribed to the Google Groups 
"pygr-dev" group.
To post to this group, send email to pygr-...@googlegroups.com.
To unsubscribe from this group, send email to 
pygr-dev+unsubscr...@googlegroups.com.
For more options, visit this group at 
http://groups.google.com/group/pygr-dev?hl=en.

Reply via email to