> Could also be a mixture of DB types that's causing the error. As you > saw in my code, I download the mouse genome first, then the MSA. As a > result, the Mouse genome is a SequenceDB while the others are all > BlastDB's. > > {'anoCar1': <BlastDB '/home/shared/pygrdata/genomes/anoCar1'>, > ... > 'loxAfr1': <BlastDB '/home/shared/pygrdata/genomes/loxAfr1'>, > 'mm9': <SequenceFileDB '/home/shared/pygrdata/genomes/mm9'>, > 'monDom4': <BlastDB '/home/shared/pygrdata/genomes/monDom4'>, > ... > 'tupBel1': <BlastDB '/home/shared/pygrdata/genomes/tupBel1'>, > 'xenTro2': <BlastDB '/home/shared/pygrdata/genomes/xenTro2'>} > After deleting mm9 from worldbase and reissuing: msa = worldbase('Bio.MSA.UCSC.mm9_multiz30way', download=True)
So that all the resources are now BlastDB's, 'mm9': <BlastDB '/home/shared/pygrdata/genomes/mm9'>, I'm still getting the same issue. -- You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-...@googlegroups.com. To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en.