Any progress on this? Were you able to restart the server? On Jul 28, 9:53 pm, jbiesinger <jake.biesin...@gmail.com> wrote: > Unfortunately, it looks like the issue is present on some smaller > MSA's... > > msa3 = worldbase('Bio.MSA.UCSC.xenTro1_multiz5way', download=True) > genome = worldbase('Bio.Seq.Genome.XENTR.xenTro1') > region = genome['scaffold_1'][760860:765260] > msa3[region].regions() > --------------------------------------------------------------------------- > ValueError Traceback (most recent call > last) > > /home/wbiesing/<ipython console> in <module>() > > /usr/local/lib/python2.6/dist-packages/pygr/cnestedlist.so in > pygr.cnestedlist.NLMSASlice.regions() > > ValueError: no LPO in nlmsaSlice.seqBounds? Debug!
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