Any progress on this?  Were you able to restart the server?

On Jul 28, 9:53 pm, jbiesinger <jake.biesin...@gmail.com> wrote:
> Unfortunately, it looks like the issue is present on some smaller
> MSA's...
>
> msa3 = worldbase('Bio.MSA.UCSC.xenTro1_multiz5way', download=True)
> genome = worldbase('Bio.Seq.Genome.XENTR.xenTro1')
> region = genome['scaffold_1'][760860:765260]
> msa3[region].regions()
> ---------------------------------------------------------------------------
> ValueError                                Traceback (most recent call
> last)
>
> /home/wbiesing/<ipython console> in <module>()
>
> /usr/local/lib/python2.6/dist-packages/pygr/cnestedlist.so in
> pygr.cnestedlist.NLMSASlice.regions()
>
> ValueError: no LPO in nlmsaSlice.seqBounds?  Debug!

-- 
You received this message because you are subscribed to the Google Groups 
"pygr-dev" group.
To post to this group, send email to pygr-...@googlegroups.com.
To unsubscribe from this group, send email to 
pygr-dev+unsubscr...@googlegroups.com.
For more options, visit this group at 
http://groups.google.com/group/pygr-dev?hl=en.

Reply via email to