Unfortunately, it looks like the issue is present on some smaller
MSA's...

msa3 = worldbase('Bio.MSA.UCSC.xenTro1_multiz5way', download=True)
genome = worldbase('Bio.Seq.Genome.XENTR.xenTro1')
region = genome['scaffold_1'][760860:765260]
msa3[region].regions()
---------------------------------------------------------------------------
ValueError                                Traceback (most recent call
last)

/home/wbiesing/<ipython console> in <module>()

/usr/local/lib/python2.6/dist-packages/pygr/cnestedlist.so in
pygr.cnestedlist.NLMSASlice.regions()

ValueError: no LPO in nlmsaSlice.seqBounds?  Debug!

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