Unfortunately, it looks like the issue is present on some smaller MSA's... msa3 = worldbase('Bio.MSA.UCSC.xenTro1_multiz5way', download=True) genome = worldbase('Bio.Seq.Genome.XENTR.xenTro1') region = genome['scaffold_1'][760860:765260] msa3[region].regions() --------------------------------------------------------------------------- ValueError Traceback (most recent call last)
/home/wbiesing/<ipython console> in <module>() /usr/local/lib/python2.6/dist-packages/pygr/cnestedlist.so in pygr.cnestedlist.NLMSASlice.regions() ValueError: no LPO in nlmsaSlice.seqBounds? Debug! -- You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-...@googlegroups.com. To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en.