Hi, I'm trying to create a movie showing mainchain and sidechain movements between two different states of a protein. I've generated the intermediate files, but they contain only the ca positions and not the other mainchain atom positions of the residues which are moving. I've specified the ss, but can not get a cartoon representation in pymol. Is not having the n, c and o the problem and is there a work round?
Máire Convery Protein Structure Section Computational and Structural Sciences Stevenage
