Ah - completely different situation....I found an installation of v0.97 (WinXP) and 1DT7 also loads fine there - so I guess it's not inherent to version 0.97 - at least not the windows version....
-Tom -----Original Message----- From: Charles Moad [mailto:cm...@indiana.edu] Sent: Sat 11/20/2004 8:42 AM To: Thomas Stout Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] cmd.read_pdbstr segfault The application actually quits, hence the seg fault error. This happens for quite a few files, and the only trend I saw was file size since the smaller ones had no troubles. - Charlie On Nov 19, 2004, at 6:21 PM, Thomas Stout wrote: > > version 0.98 (beta 07 and beta 17) loads PDB IS 1DT7 just fine. It's > a little slow, but it works! Are you sure you don't have "auto-zoom" > off? I turn auto-zoom off by default and as a result some entries > (like 1DT7) load but are not visible. Clicking the "zoom" button > brings it into the center of the graphics window..... > > -Tom > > > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net]on Behalf Of Charles > Moad > Sent: Friday, November 19, 2004 5:18 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] cmd.read_pdbstr segfault > > > pymol-0.97 cmd.read_pdbstr is dieing for remotely large pdb files. > One > for example is 1DT7. I don't get a descriptive error: > > /usr/local/bin/pymol: line 2: 10486 Segmentation fault > /usr/bin/python > /usr/local/lib/python2.3/site-packages/pymol/__init__.py > $* > > Thanks, > Charlie > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: InterSystems CACHE > FREE OODBMS DOWNLOAD - A multidimensional database that combines > robust object and relational technologies, making it a perfect match > for Java, C++,COM, XML, ODBC and JDBC. www.intersystems.com/match8 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > ------------------------------------------------------- > This SF.Net email is sponsored by: InterSystems CACHE > FREE OODBMS DOWNLOAD - A multidimensional database that combines > robust object and relational technologies, making it a perfect match > for Java, C++,COM, XML, ODBC and JDBC. www.intersystems.com/match8 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > >
