> colors by atom. But that one Warren knows (as he knows how
> to read the color from an atom, but that's someqhere in
> the archive too ;) ). Unfortunately I don't think I can
> find the time to extend mvGradCol myself at this moment :(
A simple rainbow uses colors "o107" through "o893".
It would take some Python loop programming, but the easiest way to get the
effect would be to read the colors using cmd.get_color_tuple, setting them
to new colors using cmd.set_color, and then issuing a recolor command before
rendering.
PyMOL>print cmd.get_color_tuple("o107")
(0.0020005344413220882, 0.0, 1.0)
PyMOL>cmd.set_color("o107",[1,1,1])
Color: "o107" defined as [ 1.000, 1.000, 1.000 ].
...
PyMOL>cmd.recolor()
etc.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> T.A.Wassenaar
> Sent: Tuesday, January 18, 2005 12:21 AM
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] change from spectrum to solid colour in animation
>
>
> Hi Noboru,
>
> Basically you could use that command, though you would
> have to extend it such that it reads the starting color
> from the atoms. As I recall that is possible in pymol.
> Only question which remains then is whether spectrum truly
> colors by atom. But that one Warren knows (as he knows how
> to read the color from an atom, but that's someqhere in
> the archive too ;) ). Unfortunately I don't think I can
> find the time to extend mvGradCol myself at this moment :(
>
> Hope it helps a bit,
>
> Tsjerk
>
> On Mon, 17 Jan 2005 11:48:52 -0500
> noboru <noboru.ishiy...@mail.mcgill.ca> wrote:
> > Hi everyone,
> > I'm making an animation with PyMOL right now and was
> >wondering if someone could advise me on how to gradually
> >change the colour of protein in cartoon representation
> >from spectrum to a solid colour. I don't think I can use
> >the mvGradCol command from rTools for this effect...
> > Thanks for your help in advance.
> > Noboru
> > <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
> > Noboru Ishiyama
> > Department of Biochemistry
> > McGill University
> > 740 Dr. Penfield Ave., Room 5400
> > Montreal, Quebec, Canada H3A 1A4
> > Tel.: (514) 398-8781
> >Fax: (514) 398-2036
> > Email: noboru.ishiy...@mail.mcgill.ca
> > Web: http://xray.biochem.mcgill.ca/people/noboru/
> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>
>
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