Hi Frieda, There's no such command. You'll have to parse the output you get through a script which filters it in the way you want. This isn't difficult though (good python exercise :p).
Best, Tsjerk On 10/9/07, Frieda Reichsman <[email protected]> wrote: > > Hi, > > I would like to get secondary structure information from a PyMOL file. I > searched the list and found this: > > > > I need a list of the secondary structure assigned to each residue by dss > in > > pymol. Is there a simple way to write this information to a file, or > dump it > > to the screen? > > To dump it to the screen, try: > > iterate <object name> & n. ca, print resn,resi,ss > > > and it works, but the output is a long list of every residue. Is there a > command to get the output more succinctly, such as > 1-5 L > 6-10 H > 11-15 S > > Thanks, > Frieda > > /////////////////////////////////////////// > > > Frieda Reichsman > > Molecules in Motion > > Interactive Molecular Structures > > http://www.moleculesinmotion.com > > > /////////////////////////////////////////// > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > PyMOL-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/pymol-users > > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
