Hi Frieda,
In addition to my previous mail, the following works for me:
sslist=[]
iterate n. ca, sslist.append( [resn,resi,ss] )
/i=1, j=len(sslist)-1
/while i<j:\
if sslist[i][2] == sslist[i+1][2]:\
sslist.pop[i]\
j = j - 1\
else:\
i=i+2
Hope it helps,
Tsjerk
On 10/9/07, Tsjerk Wassenaar <[email protected]> wrote:
>
> Hi Frieda,
>
> There's no such command. You'll have to parse the output you get through a
> script which filters it in the way you want. This isn't difficult though
> (good python exercise :p).
>
> Best,
>
> Tsjerk
>
> On 10/9/07, Frieda Reichsman <[email protected]> wrote:
>
> > Hi,
> >
> > I would like to get secondary structure information from a PyMOL file. I
> > searched the list and found this:
> >
> >
> > > I need a list of the secondary structure assigned to each residue by
> > dss in
> > > pymol. Is there a simple way to write this information to a file, or
> > dump it
> > > to the screen?
> >
> > To dump it to the screen, try:
> >
> > iterate <object name> & n. ca, print resn,resi,ss
> >
> >
> > and it works, but the output is a long list of every residue. Is there a
> > command to get the output more succinctly, such as
> > 1-5 L
> > 6-10 H
> > 11-15 S
> >
> > Thanks,
> > Frieda
> >
> > ///////////////////////////////////////////
> >
> >
> > Frieda Reichsman
> >
> > Molecules in Motion
> >
> > Interactive Molecular Structures
> >
> > http://www.moleculesinmotion.com
> >
> >
> > ///////////////////////////////////////////
> >
> >
> >
> >
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> >
> >
>
>
> --
> Tsjerk A. Wassenaar, Ph.D.
> Junior UD (post-doc)
> Biomolecular NMR, Bijvoet Center
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
> P: +31-30-2539931
> F: +31-30-2537623
--
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623
