Hi I am trying to define 2 scenes, in one the protein is represented in "cartoon automatic" mode in the other with "cartoon putty". Pymol (1.0 on Linux or 1.1b on Windows) both only draw the recalled scenes in putty mode. Is that expected behaviour? I would have thought that the cartoon mode is part of a scene description? The colors do get updated between the scenes.
Here is a code snipped to make this clearer: .... cartoon automatic refresh scene F1, store cartoon putty spectrum b, palette=rainbow, minimum=0, maximum=60,selection=prot and name CA scene F2, store Cheers Carsten