Hi all,

I am brand new to PyMol. I have a model of a kinase, and another of a heptapeptide
containing an experimentally derived phosphosite.

The RosettaDock documentation suggests:

PyMol can be a useful tool to position proteins relative to each other. Use "editing" mode from the right panel, and try right-clicking to select a chain and "drag" to enable translation and rotation of the molecule (typically requiring left- shift + middle and left buttons). Finally from the main menu, File→Export Molecule can be used to write a PDB file containing the starting structure with both docking partners.

Try as I may, I cannot figure out how to do this. Whatever rotations & translations I apply
to one molecule also affects the other.

I will be grateful for any advice this group can give.

Cheers,

 - Paul

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