Just use the (PyMOL) command line: "save complex.pdb" will save all objects. You'll need to figure out what directory you're in first - by default, this is probably /Applications, but "cd ~" will get you home. (Hey Warren, could this be changed so "cd" alone works, like in a Unix shell?) (Or if you have more than just those two molecules: "save complex.pdb, object1 or object2")
On Wed, Aug 13, 2008 at 12:01 PM, Paul Shannon <pshan...@systemsbiology.org>wrote: > Thanks to Warren for setting me straight on independent positioning of > molecules. > > Now I wish to write out the two molecules, together, to one pdb file, > as required by RosettaDock. I must be blind. They say: > > ...from the main menu, File→Export Molecule can be used to write > a PDB file containing > the starting structure with both docking partners. > > The closest menu option I can find (using MacPyMol) is File->Save > Molecule... > The resulting dialog apparently only allows one object to be written. > > Any advice? Thanks! > > - Paul > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
