Hi, I'm trying to set up my machine to be able to run python scripts using the PyMol API, but whenever I try to import the pymol module, I get the following output:
> Traceback (most recent call last): > File "/Users/lukegoodsell/Documents/Rotation 2/PDB/potentials.py", > line 9, in <module> > import pymol > File > "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/pymol/pymol/__init__.py", > > line 438, in <module> > import _cmd > ImportError: No module named _cmd Does anyone have any idea why this is? A search of Google and this mailing list's archive didn't turn up anything useful. My script contains only the following (as pulled from PyMol wiki, iirc): > #!/usr/bin/env python > > # Tell PyMOL we don't want any GUI features. > import __main__ > __main__.pymol_argv = [ 'pymol', '-Gi' ] > > # Importing the PyMOL module will create the window. > > import pymol > > # Call the function below before using any PyMOL modules. > > pymol.finish_launching() > > from pymol import cm I get the same error when attempting 'import pymol' from the python shell. I am running Mac OS X 10.5.6. I downloaded MacPyMol 1.1r1 from http://delsci.com/macpymol/ (the educational edition, as I am a student). My PYMOL_PATH: /Applications/PyMOLX11Hybrid.app/pymol My PYMOL_EXE: /Applications/PyMOLX11Hybrid.app/Contents/MacOS/MacPyMOL My PYTHONPATH (split for easier reading): /System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python /System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/PyObjC /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/ /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-dynload /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/lib-tk /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-darwin /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-mac /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/plat-mac/lib-scriptpackates /System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5.zip /System/Library/Frameworks/Python.framework/Versions/2.5/lib/pymol I copied the contents of /Applications/PyMOLX11Hybrid.app/pymol/modules to /System/Library/Frameworks/Python.framework/Versions/2.5/lib/pymol, as per my understanding of the top of __init__.py I am new to Macs, Python and the PyMol API, so the probability of a simple oversight on my part is high. I appreciate any help. ------------------------------------------------------------------------------ Register Now & Save for Velocity, the Web Performance & Operations Conference from O'Reilly Media. Velocity features a full day of expert-led, hands-on workshops and two days of sessions from industry leaders in dedicated Performance & Operations tracks. Use code vel09scf and Save an extra 15% before 5/3. http://p.sf.net/sfu/velocityconf _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
