O, and just when I pressed send (which also made firefox crash for
some reason), it struck me that you only load files, which means that
you're only appending states. But you don't specify a state to
calculate the distance, which means the first is taken again and
again. You might want to add a line 'cmd.delete("tmp")', or you could
load all files in separate states and use iterate_state.
Cheers,
Tsjerk
On Wed, Sep 9, 2009 at 8:51 AM, Tsjerk Wassenaar<tsje...@gmail.com> wrote:
> Hi pkb bioinfo (which I do hope is not your real name),
>
> Did you actually paste the script or did you retype it?
>
>> from pymol import cmd
>> from glob import glob
>>
>> lst = glob("*.pdb")
>> lst.sort()
>>
>> for fil in lst:
>> cmd.load(fil,"tmp")
>> dst=cmd.distance('/tmp//A/LYS`203/NZ','/tmp//A/GLU`145/OE2')
>> print lst
>
> You set dst to be the distance, and then you print lst...
>
> Cheers,
>
> Tsjerk
>
> --
> Tsjerk A. Wassenaar, Ph.D.
> Junior UD (post-doc)
> Biomolecular NMR, Bijvoet Center
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
> P: +31-30-2539931
> F: +31-30-2537623
>
--
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623
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