Hi there, I use both pymol via Fink (on MBP 10.6.2) all in 64 bits and MacPymol.
Both work fine but I tried http://pymolwiki.org/index.php/Launching_From_a_Script with 1) export PYTHONPATH=/Applications/MacPyMOL.app/pymol/modules 2) export PYTHONPATH=/sw/lib/pymol-py26/modules and running 'launch_pymol.sh' script that contains: #!/usr/bin/env python # Tell PyMOL we don't want any GUI features.import __main____main__.pymol_argv = [ 'pymol', '-Gi' ] # Importing the PyMOL module will create the window. import pymol # Call the function below before using any PyMOL modules. pymol.finish_launching() from pymol import cmdcmd.stereo('walleye')cmd.set('stereo_shift', 0.23)cmd.set('stereo_angle', 1.0) and I got for: 1) amadeus[2027]:~/TMP% ./pymol.sh Traceback (most recent call last): File "./pymol.sh", line 9, in <module> import pymol File "/Applications/MacPyMOL.app/pymol/modules/pymol/__init__.py", line 472, in <module> import _cmd ImportError: No module named _cmd 2) amadeus[2029]:~/TMP% ./pymol.sh Xlib: extension "XFree86-VidModeExtension" missing on display "/tmp/launch-35V4Bz/:0". freeglut (pymol): XF86VidModeGetViewPort failed Xlib: extension "XFree86-VidModeExtension" missing on display "/tmp/launch-35V4Bz/:0". freeglut (pymol): XF86VidModeGetModeLine failed freeglut (pymol): failed to change screen settings PyMOL(TM) Molecular Graphics System, Version 1.2r3pre. Copyright (C) 2009 by DeLano Scientific LLC. All Rights Reserved. Created by Warren L. DeLano, Ph.D. PyMOL is user-supported open-source software. Although some versions are freely available, PyMOL is not in the public domain. If PyMOL is helpful in your work or study, then please volunteer support for our ongoing efforts to create open and affordable scientific software by purchasing a PyMOL Maintenance and/or Support subscription. More information can be found at "http://www.pymol.org";. Enter "help" for a list of commands. Enter "help <command-name>" for information on a specific command. Hit ESC anytime to toggle between text and graphics. [1] 25649 segmentation fault ./pymol.sh Would someone know what else I can try to do? Many thanks in advance, Alan -- Alan Wilter Sousa da Silva, D.Sc. PDBe group, PiMS project http://www.pims-lims.org/ EMBL - EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK +44 (0)1223 492 583 (office)
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