Hi there,
Please, did someone check that? It would be very appreciated.
Thanks
Alan
On Mon, Jan 4, 2010 at 16:49, Alan <alanwil...@gmail.com> wrote:
> Hi there,
>
> I use both pymol via Fink (on MBP 10.6.2) all in 64 bits and MacPymol 1.2r3
> (licensed to PDBe).
>
> Both work fine but I tried
> http://pymolwiki.org/index.php/Launching_From_a_Script
>
> with
>
> 1) export PYTHONPATH=/Applications/MacPyMOL.app/pymol/modules
>
> 2) export PYTHONPATH=/sw/lib/pymol-py26/modules
>
> and running 'launch_pymol.sh' script that contains:
>
> #!/usr/bin/env python
> # Tell PyMOL we don't want any GUI features.import
> __main____main__.pymol_argv = [ 'pymol', '-Gi' ]
> # Importing the PyMOL module will create the window.
> import pymol
> # Call the function below before using any PyMOL modules.
>
> pymol.finish_launching()
> from pymol import cmdcmd.stereo('walleye')cmd.set('stereo_shift',
> 0.23)cmd.set('stereo_angle', 1.0)
>
>
> and I got for:
>
> 1) amadeus[2027]:~/TMP% ./pymol.sh
> Traceback (most recent call last):
> File "./pymol.sh", line 9, in <module>
> import pymol
> File "/Applications/MacPyMOL.app/pymol/modules/pymol/__init__.py", line
> 472, in <module>
> import _cmd
> ImportError: No module named _cmd
>
> 2) amadeus[2029]:~/TMP% ./pymol.sh
> Xlib: extension "XFree86-VidModeExtension" missing on display
> "/tmp/launch-35V4Bz/:0".
> freeglut (pymol): XF86VidModeGetViewPort failed
> Xlib: extension "XFree86-VidModeExtension" missing on display
> "/tmp/launch-35V4Bz/:0".
> freeglut (pymol): XF86VidModeGetModeLine failed
> freeglut (pymol): failed to change screen settings
> PyMOL(TM) Molecular Graphics System, Version 1.2r3pre.
> Copyright (C) 2009 by DeLano Scientific LLC.
> All Rights Reserved.
>
> Created by Warren L. DeLano, Ph.D.
>
> PyMOL is user-supported open-source software. Although some versions
> are freely available, PyMOL is not in the public domain.
>
> If PyMOL is helpful in your work or study, then please volunteer
> support for our ongoing efforts to create open and affordable
> scientific
> software by purchasing a PyMOL Maintenance and/or Support subscription.
>
> More information can be found at "http://www.pymol.org";.
>
> Enter "help" for a list of commands.
> Enter "help <command-name>" for information on a specific command.
>
> Hit ESC anytime to toggle between text and graphics.
>
> [1] 25649 segmentation fault ./pymol.sh
>
> Would someone know what else I can try to do?
>
> Many thanks in advance,
>
> Alan
> --
> Alan Wilter Sousa da Silva, D.Sc.
> PDBe group, PiMS project http://www.pims-lims.org/
> EMBL - EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
> +44 (0)1223 492 583 (office)
>
--
Alan Wilter Sousa da Silva, D.Sc.
PDBe group, PiMS project http://www.pims-lims.org/
EMBL - EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
+44 (0)1223 492 583 (office)
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