Matthias, Good thinking. Nice workaround.
-- Jason On Wed, Jan 20, 2010 at 2:54 AM, Matthias Haffke <matze_haf...@hotmail.com> wrote: > Thanks for your help Jason and David! > > I'll have a look at your suggestions, although I solved my problem in a > different way. I just copied the coordinates of the important symmetry mates > into the pdb file containing the original molecule of protein B (and set up > a new chain for each of the sym mates). Superimposing protein B (the chain > containing the original molecule) on protein A moves all desired sym mates > according to the movement of the original molecule. > Anyway, getting the translation / rotation matrix is much more convenient > than copying all the coordinates... :-) > > Thanks once again! > > Matthias > >> Date: Tue, 19 Jan 2010 07:02:44 -0800 >> From: dwash59_2...@yahoo.com >> Subject: Re: [PyMOL] get translation / rotation matrix from "super" >> To: matze_haf...@hotmail.com; pymol-users@lists.sourceforge.net >> >> Matthias Haffke said: >> > Is there a way to "extract" the translation / rotation matrix out of the >> > super command or can I use another command to align both, >> > protein B and A and to apply the function on every symmetry mate? >> >> In addition the commands mentioned by Jason, you can look at matrix_copy >> http://www.pymolwiki.org/index.php/Matrix_copy >> >> You would align protein B to A, then matrix_copy protein_b, symmetry_mates >> >> Note, the second argument can have a wild card, so you only need to call >> the command once to move all of them if they all have a common prefix or the >> such. >> >> -David >> >> >> > > ________________________________ > Dein Santa Claus hat rote Augen? Jetzt X-Mas-Fotos bearbeiten! > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important issues > through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
