Dear PyMOL users,

I have noticed a few times now that when I run a .pml script from a
function (i.e. MATLAB generates a .pml file and then does a system
call for PyMOL to run it) or in batch mode (.bat file that just calls
"PyMOL.exe -c -u file.pml") and if I am taking pictures with "png"
then it runs considerably slower than if I open the GUI and run the
script.  I'm doing this to automate frame generation for movie making.
 Any idea why this would be and how to make the system call at least
as fast as running the GUI?

I use:
Windows XP 64-bit SP2
PyMOL v. 1.2r1

-- 
Michael Zimmermann
Ph.D. student in Bioinformatics and Computational Biology
Department of Biochemistry, Biophysics and Molecular Biology
Iowa State University

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