Michael,

I can also reproduce this effect.  I will look into it.

-- Jason

On Wed, Feb 10, 2010 at 11:15 AM, Michael Zimmermann
<micha...@iastate.edu> wrote:
> Dear PyMOL users,
>
> I have noticed a few times now that when I run a .pml script from a
> function (i.e. MATLAB generates a .pml file and then does a system
> call for PyMOL to run it) or in batch mode (.bat file that just calls
> "PyMOL.exe -c -u file.pml") and if I am taking pictures with "png"
> then it runs considerably slower than if I open the GUI and run the
> script.  I'm doing this to automate frame generation for movie making.
>  Any idea why this would be and how to make the system call at least
> as fast as running the GUI?
>
> I use:
> Windows XP 64-bit SP2
> PyMOL v. 1.2r1
>
> --
> Michael Zimmermann
> Ph.D. student in Bioinformatics and Computational Biology
> Department of Biochemistry, Biophysics and Molecular Biology
> Iowa State University
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

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