Dear Michael,
I am using Pymol 1.2r3pre and APBS 1.2, all installed via FINK in my Mac
(10.6.2).
I start pymol, build a TRP, call apbs plugin, set grid, run apbs and I can
see surface and all, but when trying your commands below, pymol-generated
doesn't exist for me.
Either I am doing something wrong or I don't have the right version of Pymol
and/or Apbs.
May you clarify me here? This addition to the plugin would be very welcome.
Thanks in advance,
Alan
On Sat, Feb 13, 2010 at 04:55, <pymol-users-requ...@lists.sourceforge.net>wrote:
> Message: 3
> Date: Wed, 10 Feb 2010 20:26:47 -0500
> From: Michael Lerner <mgler...@gmail.com>
> Subject: [PyMOL] Showing electric field lines
> To: pymol mailinglist <pymol-users@lists.sourceforge.net>
> Message-ID:
> <e4c539ed1002101726k30ae7cbcm2482f11fe09dc...@mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi all,
>
> Someone recently asked me if there was a way to display field lines with
> PyMOL or with an external plugin. Here's what I wrote:
>
> It turns out that PyMOL recently grew the ability to display field lines.
> After you've run APBS, you'll have a map object called pymol-generated. Try
> this series of commands from the PyMOL prompt:
>
> gradient my_grad, pymol-generated
> ramp_new my_grad_ramp, pymol-generated
> color my_grad_ramp, my_grad
>
--
Alan Wilter Sousa da Silva, D.Sc.
PDBe group, PiMS project http://www.pims-lims.org/
EMBL - EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
+44 (0)1223 492 583 (office)
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