Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting.
set default,[cartoon, lines, nonbonded, cbaw] The default value as pymol starts up now would be [lines, nonbonded, cbag]. Just my 2 eurocents... Cheers, Tsjerk On Tue, Mar 16, 2010 at 12:53 AM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > David, > > You may remember writing: > >> A Pymol Quicklook plugin. My primary purpose would be for pses, but you >> might as well pick up pdbs and other formats supported by pymol along the >> way. >> For pdb files, I wouldn't want the default pymol view of lines colored by >> atom with green carbons being what I quicklook to, so either reading >> .pymolrc to get a default view or some variant ( .pymolqlrc ?) would be nice >> to allow users to customize their views. Also, maybe default to a cartoon >> representation colored by chains with het atoms as sticks and metals as >> spheres, but that's probably just forcing the view I want on others when I >> could just stick that in my personal .pymolqlrc type file. > > Well, reading through the source today, I found a couple settings that > few know about--and I might add more similar settings: > > auto_show_lines == show a newly loaded object with lines representation? > auto_show_spheres == show a newly loaded object with spheres representation? > auto_show_nonbonded == show newly loaded non-bonded? > > If these are considered useful, I can add others like: > > auto_show_cartoon(s) > > # example > set auto_show_spheres > fetch 1cll > > This offers some more flexibility for the user to choose lines or > other default representation. > > Cheers, > > -- Jason > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. Computational Chemist Medicinal Chemist Neuropharmacologist ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
