I would be a fan of auto_show_cartoon. Also, if you set more than one of
these, it will auto show more th one representation. Coolness.
If anyone is curious, I just figured out what auto_show_selections appears to
do (it is on by default), so I'll try to document that tomorrow.
Thanks,
-David
On Mar 15, 2010, at 7:53 PM, Jason Vertrees <jason.vertr...@schrodinger.com>
wrote:
David,
You may remember writing:
A Pymol Quicklook plugin. My primary purpose would be for pses, but you might
as well pick up pdbs and other formats supported by pymol along the way.
For pdb files, I wouldn't want the default pymol view of lines colored by atom
with green carbons being what I quicklook to, so either reading .pymolrc to get
a default view or some variant ( .pymolqlrc ?) would be nice to allow users to
customize their views. Also, maybe default to a cartoon representation colored
by chains with het atoms as sticks and metals as spheres, but that's probably
just forcing the view I want on others when I could just stick that in my
personal .pymolqlrc type file.
Well, reading through the source today, I found a couple settings that
few know about--and I might add more similar settings:
auto_show_lines == show a newly loaded object with lines representation?
auto_show_spheres == show a newly loaded object with spheres representation?
auto_show_nonbonded == show newly loaded non-bonded?
If these are considered useful, I can add others like:
auto_show_cartoon(s)
# example
set auto_show_spheres
fetch 1cll
This offers some more flexibility for the user to choose lines or
other default representation.
Cheers,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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