> I wonder if there’s any way to get around this? Obviously I can just turn > off cartoon_side_chain_helper, but it’s so handy...
Jared, Just select the atoms you want shown as sticks in the side-chain and turn off their cartoon representation: # 1. Using the mouse, select just those three oxygens; you now have the selection "sele" hide cartoons, sele -- Jason On Thu, Mar 25, 2010 at 6:15 PM, Sampson, Jared <jared.samp...@nyumc.org> wrote: > Hi all - > > I have a structure where a serine is phosphorylated, so the residue is SEP. > If cartoon_side_chain_helper is on, the sticks disappear from the phosphate > group oxygens (O1P, O2P and O3P), even if I issue something like > > show sticks, (obj and i. 54 and n. P,O1P,O2P,O3P) > > I wonder if there’s any way to get around this? Obviously I can just turn > off cartoon_side_chain_helper, but it’s so handy... > > Thanks, > > Jared > > Jared Sampson > Xiangpeng Kong Lab > NYU Langone Medical Center > New York, NY 10016 > (212) 263-7898 > > ------------------------------------------------------------ > This email message, including any attachments, is for the sole use of the > intended recipient(s) and may contain information that is proprietary, > confidential, and exempt from disclosure under applicable law. Any > unauthorized review, use, disclosure, or distribution is prohibited. If you > have received this email in error please notify the sender by return email > and delete the original message. Please note, the recipient should check this > email and any attachments for the presence of viruses. The organization > accepts no liability for any damage caused by any virus transmitted by this > email. > ================================= > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
