Indeed batch mode would not be what I wanted.
Thanks for the hints, I'll give it a try.

I guess I'll also have to look at the glob module.






Am 01.09.10 15:55, schrieb Michael F. Summers:
> My favorite way to do this is to add the following to an alias file that is 
> sourced upon login:
>
> alias pm '/Applications/MacPyMol.app/Contents/MacOS/MacPyMOL $*'
>
>
> With this approach, you can "cd" to any directory that contains a pdb file of 
> interest,
> and type:  pm filename.pdb
>
> Pymol launches, opens the pdb file, and uses the current directory.
>
> Mike
>
>
>
> On Sep 1, 2010, at 9:44 AM, Martin Hediger wrote:
>
>>   Dear All
>> I'm using Mac OS X and would like to start PyMOL from the command line,
>> so I can open up .pdb files from a command line argument by issuing $
>> pymol -c /directory/*pdb (for some reason, within pymol it seems to be
>> not possible to issue 'PyMOL>  *pdb').
>> When I enter 'pymol' in the Terminal, the Shell freezes and I have to
>> kill the process.
>> What is required to do so PyMOL becomes launchable from the command line.
>>
>> Thanks for suggestions.
>>
>> Martin
>>
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