On 17:39 Tue 12 Oct , Cristina RodrÃguez wrote: > All it's alright! It gives me the right outputs, but when I want to > visualize them in the "View Pose" window, I can't load anything! I've > tried with *.pdbqt and *.dlg files obtained from Autock/Vina and > Autodock4 respectively. Is it possible that should I change any > specific script?
I've found that I can't load a set of docked files if I haven't done some of the "processing" steps, as the code seems to look for ligands that are already in its dictionary rather than loading whatever's found. If you're trying to view them after quitting PyMol, try re-processing all the ligands as if you're going to set up a new docking run, then load the results. -- Thanks, Donnie Donald S. Berkholz, Ph.D. Research Fellow James R. Thompson lab, Physiology & Biomedical Engineering Grazia Isaya lab, Pediatric & Adolescent Medicine Medical Sciences 2-66 Mayo Clinic College of Medicine 200 First Street SW Rochester, MN 55905 office: 507-538-6924 cell: 612-991-1321
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